Literature DB >> 27818083

Shotgun Metagenomics of 250 Adult Twins Reveals Genetic and Environmental Impacts on the Gut Microbiome.

Hailiang Xie1, Ruijin Guo2, Huanzi Zhong1, Qiang Feng3, Zhou Lan4, Bingcai Qin4, Kirsten J Ward5, Matthew A Jackson5, Yan Xia6, Xu Chen7, Bing Chen1, Huihua Xia8, Changlu Xu7, Fei Li9, Xun Xu1, Jumana Yousuf Al-Aama4, Huanming Yang10, Jian Wang10, Karsten Kristiansen11, Jun Wang12, Claire J Steves5, Jordana T Bell5, Junhua Li13, Timothy D Spector14, Huijue Jia15.   

Abstract

The gut microbiota has been typically viewed as an environmental factor for human health. Twins are well suited for investigating the concordance of their gut microbiomes and decomposing genetic and environmental influences. However, existing twin studies utilizing metagenomic shotgun sequencing have included only a few samples. Here, we sequenced fecal samples from 250 adult twins in the TwinsUK registry and constructed a comprehensive gut microbial reference gene catalog. We demonstrate heritability of many microbial taxa and functional modules in the gut microbiome, including those associated with diseases. Moreover, we identified 8 million SNPs in the gut microbiome and observe a high similarity in microbiome SNPs between twins that slowly decreases after decades of living apart. The results shed new light on the genetic and environmental influences on the composition and function of the gut microbiome that could relate to risk of complex diseases.
Copyright © 2016. Published by Elsevier Inc.

Entities:  

Keywords:  SNPs; heritability; metabolic diseases; microbiome

Year:  2016        PMID: 27818083      PMCID: PMC6309625          DOI: 10.1016/j.cels.2016.10.004

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  83 in total

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Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

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Journal:  PLoS One       Date:  2008-08-26       Impact factor: 3.240

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Authors:  Peter J Turnbaugh; Micah Hamady; Tanya Yatsunenko; Brandi L Cantarel; Alexis Duncan; Ruth E Ley; Mitchell L Sogin; William J Jones; Bruce A Roe; Jason P Affourtit; Michael Egholm; Bernard Henrissat; Andrew C Heath; Rob Knight; Jeffrey I Gordon
Journal:  Nature       Date:  2008-11-30       Impact factor: 49.962

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  88 in total

Review 1.  The Role of the Gut Microbiome in Predicting Response to Diet and the Development of Precision Nutrition Models. Part II: Results.

Authors:  Riley L Hughes; Mary E Kable; Maria Marco; Nancy L Keim
Journal:  Adv Nutr       Date:  2019-11-01       Impact factor: 8.701

2.  The metagenome of the female upper reproductive tract.

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Journal:  Gigascience       Date:  2018-10-01       Impact factor: 6.524

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Authors:  Shijie Zhao; Tami D Lieberman; Mathilde Poyet; Kathryn M Kauffman; Sean M Gibbons; Mathieu Groussin; Ramnik J Xavier; Eric J Alm
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Authors:  Andrew Brantley Hall; Andrew C Tolonen; Ramnik J Xavier
Journal:  Nat Rev Genet       Date:  2017-08-21       Impact factor: 53.242

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Authors:  Paul W O'Toole; Ian B Jeffery
Journal:  Cell Mol Life Sci       Date:  2017-10-06       Impact factor: 9.261

6.  Relationship between the Gut Microbiome and Energy/Nutrient Intake in a Confined Bioregenerative Life Support System.

Authors:  Juanjuan Chen; Qi Wang; Zikai Hao; Zhongxia Li; Sunil Kumar Sahu; Hong Liu; Liang Xiao
Journal:  Appl Environ Microbiol       Date:  2020-02-03       Impact factor: 4.792

Review 7.  Bioavailability Based on the Gut Microbiota: a New Perspective.

Authors:  Feng Zhang; Fang He; Li Li; Lichun Guo; Bin Zhang; Shuhuai Yu; Wei Zhao
Journal:  Microbiol Mol Biol Rev       Date:  2020-04-29       Impact factor: 11.056

8.  Gut microbiome beats two to zero host genome.

Authors:  Giovanni Cammarota; Lorenza Putignani; Antonio Gasbarrini
Journal:  Hepatobiliary Surg Nutr       Date:  2019-08       Impact factor: 7.293

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Journal:  Nat Rev Cardiol       Date:  2017-08-24       Impact factor: 32.419

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Authors:  Pamela Herd; Alberto Palloni; Federico Rey; Jennifer B Dowd
Journal:  Nat Hum Behav       Date:  2018-10-22
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