Literature DB >> 27815530

Cross-linking reveals laminin coiled-coil architecture.

Gad Armony1, Etai Jacob1,2, Toot Moran1, Yishai Levin3, Tevie Mehlman4, Yaakov Levy1, Deborah Fass5.   

Abstract

Laminin, an ∼800-kDa heterotrimeric protein, is a major functional component of the extracellular matrix, contributing to tissue development and maintenance. The unique architecture of laminin is not currently amenable to determination at high resolution, as its flexible and narrow segments complicate both crystallization and single-particle reconstruction by electron microscopy. Therefore, we used cross-linking and MS, evaluated using computational methods, to address key questions regarding laminin quaternary structure. This approach was particularly well suited to the ∼750-Å coiled coil that mediates trimer assembly, and our results support revision of the subunit order typically presented in laminin schematics. Furthermore, information on the subunit register in the coiled coil and cross-links to downstream domains provide insights into the self-assembly required for interaction with other extracellular matrix and cell surface proteins.

Keywords:  coiled coil; cross-linking; extracellular matrix; laminin; mass spectrometry

Mesh:

Substances:

Year:  2016        PMID: 27815530      PMCID: PMC5127338          DOI: 10.1073/pnas.1608424113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

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Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

2.  Identification of cross-linked peptides from large sequence databases.

Authors:  Oliver Rinner; Jan Seebacher; Thomas Walzthoeni; Lukas N Mueller; Martin Beck; Alexander Schmidt; Markus Mueller; Ruedi Aebersold
Journal:  Nat Methods       Date:  2008-03-09       Impact factor: 28.547

3.  Nonnative electrostatic interactions can modulate protein folding: molecular dynamics with a grain of salt.

Authors:  Ariel Azia; Yaakov Levy
Journal:  J Mol Biol       Date:  2009-08-13       Impact factor: 5.469

Review 4.  Basement membranes: cell scaffoldings and signaling platforms.

Authors:  Peter D Yurchenco
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

5.  Mapping of network-forming, heparin-binding, and alpha 1 beta 1 integrin-recognition sites within the alpha-chain short arm of laminin-1.

Authors:  H Colognato-Pyke; J J O'Rear; Y Yamada; S Carbonetto; Y S Cheng; P D Yurchenco
Journal:  J Biol Chem       Date:  1995-04-21       Impact factor: 5.157

6.  Ionic interactions in the coiled-coil domain of laminin determine the specificity of chain assembly.

Authors:  K Beck; T W Dixon; J Engel; D A Parry
Journal:  J Mol Biol       Date:  1993-05-20       Impact factor: 5.469

7.  Determinants of laminin polymerization revealed by the structure of the α5 chain amino-terminal region.

Authors:  Sadaf-Ahmahni Hussain; Federico Carafoli; Erhard Hohenester
Journal:  EMBO Rep       Date:  2011-02-11       Impact factor: 8.807

8.  Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes.

Authors:  Alexander Leitner; Lukasz A Joachimiak; Pia Unverdorben; Thomas Walzthoeni; Judith Frydman; Friedrich Förster; Ruedi Aebersold
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-17       Impact factor: 11.205

9.  Crystal structures of the network-forming short-arm tips of the laminin β1 and γ1 chains.

Authors:  Federico Carafoli; Sadaf-Ahmahni Hussain; Erhard Hohenester
Journal:  PLoS One       Date:  2012-07-31       Impact factor: 3.240

10.  2016 update of the PRIDE database and its related tools.

Authors:  Juan Antonio Vizcaíno; Attila Csordas; Noemi del-Toro; José A Dianes; Johannes Griss; Ilias Lavidas; Gerhard Mayer; Yasset Perez-Riverol; Florian Reisinger; Tobias Ternent; Qing-Wei Xu; Rui Wang; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

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  8 in total

1.  Sliding Mechanism at a Coiled-Coil Interface.

Authors:  David Gomez; Yulian Gavrilov; Yaakov Levy
Journal:  Biophys J       Date:  2019-03-07       Impact factor: 4.033

2.  Fine mapping of hydrophobic contacts reassesses the organization of the first three dystrophin coiled-coil repeats.

Authors:  Dominique Mias-Lucquin; Angélique Chéron; Elisabeth Le Rumeur; Jean-François Hubert; Olivier Delalande
Journal:  Protein Sci       Date:  2019-01-14       Impact factor: 6.725

3.  Bottom-up approaches in synthetic biology and biomaterials for tissue engineering applications.

Authors:  Mitchell S Weisenberger; Tara L Deans
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-19       Impact factor: 3.346

4.  Crystal Structure of the Heterotrimeric Integrin-Binding Region of Laminin-111.

Authors:  David Pulido; Sadaf-Ahmahni Hussain; Erhard Hohenester
Journal:  Structure       Date:  2017-01-26       Impact factor: 5.006

Review 5.  Structural biology of laminins.

Authors:  Erhard Hohenester
Journal:  Essays Biochem       Date:  2019-09-13       Impact factor: 8.000

6.  Missing regions within the molecular architecture of human fibrin clots structurally resolved by XL-MS and integrative structural modeling.

Authors:  Oleg Klykov; Carmen van der Zwaan; Albert J R Heck; Alexander B Meijer; Richard A Scheltema
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-10       Impact factor: 11.205

Review 7.  Mechanotransduction through adhesion molecules: Emerging roles in regulating the stem cell niche.

Authors:  Ryan Lim; Avinanda Banerjee; Ritusree Biswas; Anana Nandakumar Chari; Srikala Raghavan
Journal:  Front Cell Dev Biol       Date:  2022-09-12

8.  Advancing the Frontiers of Chemical Protein Synthesis-The 7th CPS Meeting, Haifa, Israel.

Authors:  Anne C Conibear; Markus Muttenthaler
Journal:  Cell Chem Biol       Date:  2018-03-15       Impact factor: 8.116

  8 in total

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