| Literature DB >> 27814746 |
Tawanda Manyangadze1, Moses John Chimbari2, Michael Gebreslasie3, Pietro Ceccato4, Samson Mukaratirwa5.
Abstract
BACKGROUND: Schistosomiasis is a snail-borne disease endemic in sub-Saharan Africa transmitted by freshwater snails. The distribution of schistosomiasis coincides with that of the intermediate hosts as determined by climatic and environmental factors. The aim of this paper was to model the spatial and seasonal distribution of suitable habitats for Bulinus globosus and Biomphalaria pfeifferi snail species (intermediate hosts for Schistosoma haematobium and Schistosoma mansoni, respectively) in the Ndumo area of uMkhanyakude district, South Africa.Entities:
Keywords: Maxent; Predictive modelling; Schistosomiasis; Snail-borne disease modelling
Mesh:
Year: 2016 PMID: 27814746 PMCID: PMC5096326 DOI: 10.1186/s13071-016-1834-5
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Ndumo area of uMkhanyakude district, KwaZulu-Natal, South Africa
Number of sites used in MAXENT modelling per season in Ndumo area of uMkhanyakude district, South Africa
| Number of sampling sites with intermediate host snails | ||||
|---|---|---|---|---|
| Snail species | Cold/dry (June-August) | Hot/dry (September-November) | Rainy (December-February) | Post-rainy (March-May) |
|
| 9 | 8 | 2a | 12 |
|
| 6 | 4a | 0a | 4a |
aWe did not apply the MAXENT model since the numbers of sites were too low
Specifics and sources of the environmental data used for habitat suitability modelling
| Variables | Data source | Resolution | Reference |
|---|---|---|---|
| Rainfall | UCSB | 5 km |
|
| Tmax | USGS | 1 km |
|
| Tmin | USGS | 1 km |
|
| Slope | NASA | 1 km |
|
| Soil pH | ISRIC-WISE | 1 km |
|
| NDVI | USGS | 250 m |
|
| EVI | USGS | 250 m |
|
Abbreviations: T maximum temperature, T minimum temperature, NDVI Normalised Difference Vegetation Index, EVI Enhanced Vegetation Index, UCSB University of California Santa Barbara, USGS United States Geological Survey, NASA National Aeronautics and Space Administration, ISRIC-WISE International Soil Reference and Information Centre - World Inventory of Soil Emission Potentials
Spatial variability of the mean climatic and environmental factors in Ndumo area, uMkhanyakude using annual data (n = 580)
| Layer | Min | Max | Mean | SD |
|---|---|---|---|---|
| Tampl (°C) | 12.2635 | 20.0988 | 17.1146 | 1.4854 |
| EVI | 0.1229 | 0.4863 | 0.3339 | 0.0455 |
| NDVI | 0.3412 | 0.7954 | 0.5870 | 0.0672 |
| NDWI | 0.0572 | 0.6366 | 0.3181 | 0.1017 |
| pH | 0.0000 | 7.1000 | 6.2607 | 0.3466 |
| Rainfall (mm) | 63.9332 | 82.6011 | 67.7048 | 3.9479 |
| Slope (degrees) | 0.0000 | 8.7760 | 1.7606 | 1.5461 |
| Tmax (°C) | 28.6419 | 36.0420 | 33.2673 | 1.4028 |
| Tmin (°C) | 14.5396 | 17.2790 | 16.1348 | 0.6313 |
Abbreviations: T temperature amplitude (°C), EVI Enhanced Vegetation Index, NDVI Normalised Difference Vegetation Index, NDWI Normalised Difference Water Index, SD standard deviation, T maximum temperature, T minimum temperature
Seasonal variability of the mean climatic and environmental factors in Ndumo area, uMkhanyakude, South Africa (n = 580)
| Variable | Rainy | Post-rainy | Cold/dry | Hot/dry |
|---|---|---|---|---|
| Mean ± SD | Mean ± SD | Mean ± SD | Mean ± SD | |
| Tampl (°C) | 15.29 ± 1.62 | 14.50 ± 1.34 | 17.23 ± 1.36 | 20.74 ± 1.88 |
| EVI | 0.43 ± 0.05 | 0.37 ± 0.04 | 0.26 ± 0.05 | 0.28 ± 0.05 |
| NDVI | 0.68 ± 0.06 | 0.66 ± 0.06 | 0.51 ± 0.08 | 0.50 ± 0.07 |
| NDWI | 0.46 ± 0.08 | 0.44 ± 0.10 | 0.21 ± 0.13 | 0.18 ± 0.11 |
| Rainfall (mm) | 91.19 ± 5.51 | 41.28 ± 3.73 | 12.76 ± 1.39 | 62.64 ± 3.21 |
| Tmax (°C) | 35.53 ± 1.58 | 31.11 ± 1.11 | 29.11 ± 1.15 | 36.72 ± 1.85 |
| Tmin (°C) | 20.15 ± 0.42 | 16.48 ± 0.87 | 11.85 ± 0.96 | 15.98 ± 0.59 |
Abbreviations: EVI Enhanced Vegetation Index, NDVI Normalised Difference Vegetation Index, NDWI Normalised Difference Water Index, SD standard deviation, T temperature amplitude, T maximum temperature, T minimum temperature
Fig. 2Modelled predictions of habitat suitability of a Bulinus globosus and b Bimphalaria pfeifferi in Ndumo area, uMkhanyakude district, South Africa based on annual averages of climatic variables and non-climatic variable (shown in Table 2)
Fig. 3Predicted snail habitat suitability for two snail species in Ndumo area of uMkhanyakude district, South Africa. a Bulinus globosus in cold/dry season (June to August). b Biomphalaria pfeifferi in cold/dry season (June to August). c Bulinus globosus in hot/dry season (September to November). d Bulinus globosus in post-rainy season (March to May)
Test statistics for two MAXENT models from two snail species in Ndumo area, uMkhanyakude, KwaZulu-Natal, South Africa
|
|
| |||||
|---|---|---|---|---|---|---|
| Annual | Post-rainy | Cold/dry | Hot/dry | Annual | Cold/dry | |
| AUC | 0.71 | 0.91 | 1 | 0.86 | 0.87 | 0.8 |
| Weighted predictiona | 0.80 | 0.83 | 0.89 | 0.86 | 0.90 | 0.89 |
| Feature typeb | 4 | 5 | 4 | 4 | 4 | 4 |
| Variable contribution (%) | ||||||
| Tampl | 24.8 | na | 0 | 41.1 | 4.5 | 0 |
| EVI | 3.9 | 0 | 0 | 5.6 | 0 | 0 |
| NDWI | 42.3 | 52 | 54.3 | 22.5 | 53.4 | 37.7 |
| pH | 0 | 0 | 0 | 0 | 0 | 0 |
| Rainfall | 3.9 | 27.7 | 0 | 3.5 | 24.6 | 1.1 |
| Slope | 22.1 | 5 | 7.1 | 27.5 | 4.3 | 3.1 |
| Tmax | na | 15.2 | 38.6 | na | na | 58.5 |
| Tmin | 3 | 0 | 0 | 0 | 13.1 | 0.6 |
| NDVI | na | 0.1 | na | na | na | na |
| Habitat threshold valuec | 0.468 | 0.513 | 0.328 | 0.686 | 0.630 | 0.356 |
| Suitable habitat area (km2) | 125.21 | 87.04 | 110.71 | 16.03 | 62.61 | 101.54 |
| Percent suitable habitats (%) | 29.29 | 20.36 | 25.89 | 3.75 | 14.64 | 23.75 |
aThe highest weighted prediction indicates the lowest omission rate
bFeature type classes: 1, linear; 2, linear and quadratic; 3, hinge; 4, linear, quadratic, and hinge; 5, linear, quadratic, hinge, product, and threshold
cHabitat threshold values were based on maximum training sensitivity plus specificity from Maxent model
Abbreviations: AUC area under the curve, EVI Enhanced Vegetation Index, NDWI Normalised Difference Water Index, NDVI Normalised Difference Vegetation Index, T maximum temperature, T temperature amplitude, T minimum temperature, na not applicable, the variable was not used due to its high correlation with other variables
Fig. 4Seasonal suitable and not suitable habitats for two snail species in Ndumo area of uMkhanyakude district, South Africa classified based on maximum training sensitivity plus specificity from Maxent model. a Bulinus globosus in cold/dry season (June to August). b Biomphalaria pfeifferi in cold/dry season (June to August). c Bulinus globosus in hot/dry season (September to November). d Bulinus globosus in post-rainy season (March to May)