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Literature DB >> 27811910

Codon optimality and mRNA decay.

Abstract

Recent evidence indicates that codon optimality is a broad determinant of mRNA stability. A study by Radhakrishnan et al. in Cell raises the possibility that the conserved DEAD-box protein Dhh1 underlies the phenomenon.

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Year: 2016 PMID： 27811910 PMCID： PMC5143416 DOI： 10.1038/cr.2016.127

Source DB: PubMed Journal: Cell Res ISSN： 1001-0602 Impact factor: 25.617

10 in total

1. Synthesis at the Speed of Codons.

Authors: Kristin S Koutmou; Aditya Radhakrishnan; Rachel Green
Journal: Trends Biochem Sci Date: 2015-10-31 Impact factor: 13.807

2. Translation elongation can control translation initiation on eukaryotic mRNAs.

Authors: Dominique Chu; Eleanna Kazana; Noémie Bellanger; Tarun Singh; Mick F Tuite; Tobias von der Haar
Journal: EMBO J Date: 2013-12-19 Impact factor: 11.598

3. Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae.

Authors: Vidya Balagopal; Roy Parker
Journal: RNA Date: 2011-04-01 Impact factor: 4.942

4. Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Authors: Ariel A Bazzini; Florencia Del Viso; Miguel A Moreno-Mateos; Timothy G Johnstone; Charles E Vejnar; Yidan Qin; Jun Yao; Mustafa K Khokha; Antonio J Giraldez
Journal: EMBO J Date: 2016-07-19 Impact factor: 11.598

5. The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality.

Authors: Aditya Radhakrishnan; Ying-Hsin Chen; Sophie Martin; Najwa Alhusaini; Rachel Green; Jeff Coller
Journal: Cell Date: 2016-09-15 Impact factor: 41.582

6. Codon optimality is a major determinant of mRNA stability.

Authors: Vladimir Presnyak; Najwa Alhusaini; Ying-Hsin Chen; Sophie Martin; Nathan Morris; Nicholas Kline; Sara Olson; David Weinberg; Kristian E Baker; Brenton R Graveley; Jeff Coller
Journal: Cell Date: 2015-03-12 Impact factor: 41.582

7. A comprehensive, quantitative, and genome-wide model of translation.

Authors: Marlena Siwiak; Piotr Zielenkiewicz
Journal: PLoS Comput Biol Date: 2010-07-29 Impact factor: 4.475

8. Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.

Authors: Yuichiro Mishima; Yukihide Tomari
Journal: Mol Cell Date: 2016-03-17 Impact factor: 17.970

9. Codon influence on protein expression in E. coli correlates with mRNA levels.

Authors: Reka Letso; Helen Neely; W Nicholson Price; Grégory Boël; Kam-Ho Wong; Min Su; Jon Luff; Mayank Valecha; John K Everett; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Daniel P Aalberts; John F Hunt
Journal: Nature Date: 2016-01-13 Impact factor: 49.962

Review 10. RNA degradation in Saccharomyces cerevisae.

Authors: Roy Parker
Journal: Genetics Date: 2012-07 Impact factor: 4.562

10 in total

6 in total

Codon optimality and mRNA decay.

1. Synthesis at the Speed of Codons.

2. Translation elongation can control translation initiation on eukaryotic mRNAs.

3. Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae.

4. Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

5. The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality.

6. Codon optimality is a major determinant of mRNA stability.

7. A comprehensive, quantitative, and genome-wide model of translation.

8. Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish.

9. Codon influence on protein expression in E. coli correlates with mRNA levels.

Review 10. RNA degradation in Saccharomyces cerevisae.

1. Poor codon optimality as a signal to degrade transcripts with frameshifts.

2. A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.

3. The link between adjacent codon pairs and mRNA stability.

4. YeasTSS: an integrative web database of yeast transcription start sites.

5. Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae.

Review 6. An RNA decay factor wears a new coat: UPF3B modulates translation termination.