Literature DB >> 27810005

To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery.

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Abstract

The revolution in neuroscientific data acquisition is creating an analysis challenge. We propose leveraging cloud-computing technologies to enable large-scale neurodata storing, exploring, analyzing, and modeling. This utility will empower scientists globally to generate and test theories of brain function and dysfunction.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID： 27810005      PMCID： PMC5860644          DOI： 10.1016/j.neuron.2016.10.033

Source DB:  PubMed          Journal:  Neuron        ISSN： 0896-6273            Impact factor:   17.173


  15 in total

1.  The MNI data-sharing and processing ecosystem.

Authors:  Samir Das; Tristan Glatard; Leigh C MacIntyre; Cecile Madjar; Christine Rogers; Marc-Etienne Rousseau; Pierre Rioux; Dave MacFarlane; Zia Mohades; Rathi Gnanasekaran; Carolina Makowski; Penelope Kostopoulos; Reza Adalat; Najmeh Khalili-Mahani; Guiomar Niso; Jeremy T Moreau; Alan C Evans
Journal:  Neuroimage       Date:  2015-09-10       Impact factor: 6.556

2.  Data sharing for computational neuroscience.

Authors:  Jeffrey L Teeters; Kenneth D Harris; K Jarrod Millman; Bruno A Olshausen; Friedrich T Sommer
Journal:  Neuroinformatics       Date:  2008-02-08

3.  BigBrain: an ultrahigh-resolution 3D human brain model.

Authors:  Katrin Amunts; Claude Lepage; Louis Borgeat; Hartmut Mohlberg; Timo Dickscheid; Marc-Étienne Rousseau; Sebastian Bludau; Pierre-Louis Bazin; Lindsay B Lewis; Ana-Maria Oros-Peusquens; Nadim J Shah; Thomas Lippert; Karl Zilles; Alan C Evans
Journal:  Science       Date:  2013-06-21       Impact factor: 47.728

4.  The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.

Authors:  Randal Burns; William Gray Roncal; Dean Kleissas; Kunal Lillaney; Priya Manavalan; Eric Perlman; Daniel R Berger; Davi D Bock; Kwanghun Chung; Logan Grosenick; Narayanan Kasthuri; Nicholas C Weiler; Karl Deisseroth; Michael Kazhdan; Jeff Lichtman; R Clay Reid; Stephen J Smith; Alexander S Szalay; Joshua T Vogelstein; R Jacob Vogelstein
Journal:  Sci Stat Database Manag       Date:  2013

5.  The Image and Data Archive at the Laboratory of Neuro Imaging.

Authors:  Karen L Crawford; Scott C Neu; Arthur W Toga
Journal:  Neuroimage       Date:  2015-05-14       Impact factor: 6.556

Review 6.  Worldwide initiatives to advance brain research.

Authors:  Sten Grillner; Nancy Ip; Christof Koch; Walter Koroshetz; Hideyuki Okano; Miri Polachek; Mu-Ming Poo; Terrence J Sejnowski
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

7.  Open is Not Enough. Let's Take the Next Step: An Integrated, Community-Driven Computing Platform for Neuroscience.

Authors:  Yaroslav O Halchenko; Michael Hanke
Journal:  Front Neuroinform       Date:  2012-06-29       Impact factor: 4.081

8.  Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure.

Authors:  Winfried Denk; Heinz Horstmann
Journal:  PLoS Biol       Date:  2004-10-19       Impact factor: 8.029

9.  Toward open sharing of task-based fMRI data: the OpenfMRI project.

Authors:  Russell A Poldrack; Deanna M Barch; Jason P Mitchell; Tor D Wager; Anthony D Wagner; Joseph T Devlin; Chad Cumba; Oluwasanmi Koyejo; Michael P Milham
Journal:  Front Neuroinform       Date:  2013-07-08       Impact factor: 4.081

10.  Sharing privacy-sensitive access to neuroimaging and genetics data: a review and preliminary validation.

Authors:  Anand D Sarwate; Sergey M Plis; Jessica A Turner; Mohammad R Arbabshirani; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2014-04-07       Impact factor: 4.081
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  14 in total

1.  We Must Invest in Applied Knowledge of Computational Neurosciences and Neuroinformatics as an Important Future in Malaysia: The Malaysian Brain Mapping Project.

Authors:  Putra Sumari; Zamzuri Idris; Jafri Malin Abdullah
Journal:  Malays J Med Sci       Date:  2017-02-24

2.  Neuroscience Cloud Analysis As a Service: An open-source platform for scalable, reproducible data analysis.

Authors:  Taiga Abe; Ian Kinsella; Shreya Saxena; E Kelly Buchanan; Joao Couto; John Briggs; Sian Lee Kitt; Ryan Glassman; John Zhou; Liam Paninski; John P Cunningham
Journal:  Neuron       Date:  2022-07-22       Impact factor: 18.688

3.  Bridging the Brain and Data Sciences.

Authors:  John Darrell Van Horn
Journal:  Big Data       Date:  2020-11-18       Impact factor: 4.426

4.  Running Neuroimaging Applications on Amazon Web Services: How, When, and at What Cost?

Authors:  Tara M Madhyastha; Natalie Koh; Trevor K M Day; Moises Hernández-Fernández; Austin Kelley; Daniel J Peterson; Sabreena Rajan; Karl A Woelfer; Jonathan Wolf; Thomas J Grabowski
Journal:  Front Neuroinform       Date:  2017-11-03       Impact factor: 4.081

5.  Advances in Studying Brain Morphology: The Benefits of Open-Access Data.

Authors:  Christopher R Madan
Journal:  Front Hum Neurosci       Date:  2017-08-04       Impact factor: 3.169

6.  Imagining the "open" university: Sharing scholarship to improve research and education.

Authors:  Erin C McKiernan
Journal:  PLoS Biol       Date:  2017-10-24       Impact factor: 8.029

7.  A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble.

Authors:  Jay S Coggan; Corrado Calì; Daniel Keller; Marco Agus; Daniya Boges; Marwan Abdellah; Kalpana Kare; Heikki Lehväslaiho; Stefan Eilemann; Renaud Blaise Jolivet; Markus Hadwiger; Henry Markram; Felix Schürmann; Pierre J Magistretti
Journal:  Front Neurosci       Date:  2018-09-25       Impact factor: 4.677

8.  Be the change you seek in science.

Authors:  Michael P Milham; Arno Klein
Journal:  BMC Biol       Date:  2019-03-27       Impact factor: 7.431

9.  Q&A: Array tomography.

Authors:  Stephen J Smith
Journal:  BMC Biol       Date:  2018-09-06       Impact factor: 7.431

10.  The SONATA data format for efficient description of large-scale network models.

Authors:  Kael Dai; Juan Hernando; Yazan N Billeh; Sergey L Gratiy; Judit Planas; Andrew P Davison; Salvador Dura-Bernal; Padraig Gleeson; Adrien Devresse; Benjamin K Dichter; Michael Gevaert; James G King; Werner A H Van Geit; Arseny V Povolotsky; Eilif Muller; Jean-Denis Courcol; Anton Arkhipov
Journal:  PLoS Comput Biol       Date:  2020-02-24       Impact factor: 4.475
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