Literature DB >> 27801910

Trade-offs between microbiome diversity and productivity in a stratified microbial mat.

Hans C Bernstein1,2,3, Colin Brislawn2, Ryan S Renslow2,3, Karl Dana1, Beau Morton2, Stephen R Lindemann2, Hyun-Seob Song2, Erhan Atci3, Haluk Beyenal3, James K Fredrickson2, Janet K Jansson2, James J Moran1.   

Abstract

Productivity is a major determinant of ecosystem diversity. Microbial ecosystems are the most diverse on the planet yet very few relationships between diversity and productivity have been reported as compared with macro-ecological studies. Here we evaluated the spatial relationships of productivity and microbiome diversity in a laboratory-cultivated photosynthetic mat. The goal was to determine how spatial diversification of microorganisms drives localized carbon and energy acquisition rates. We measured sub-millimeter depth profiles of net primary productivity and gross oxygenic photosynthesis in the context of the localized microenvironment and community structure, and observed negative correlations between species richness and productivity within the energy-replete, photic zone. Variations between localized community structures were associated with distinct taxa as well as environmental profiles describing a continuum of biological niches. Spatial regions in the photic zone corresponding to high primary productivity and photosynthesis rates had relatively low-species richness and high evenness. Hence, this system exhibited negative species-productivity and species-energy relationships. These negative relationships may be indicative of stratified, light-driven microbial ecosystems that are able to be the most productive with a relatively smaller, even distributions of species that specialize within photic zones.

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Year:  2016        PMID: 27801910      PMCID: PMC5270574          DOI: 10.1038/ismej.2016.133

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  37 in total

1.  Integrative modelling reveals mechanisms linking productivity and plant species richness.

Authors:  James B Grace; T Michael Anderson; Eric W Seabloom; Elizabeth T Borer; Peter B Adler; W Stanley Harpole; Yann Hautier; Helmut Hillebrand; Eric M Lind; Meelis Pärtel; Jonathan D Bakker; Yvonne M Buckley; Michael J Crawley; Ellen I Damschen; Kendi F Davies; Philip A Fay; Jennifer Firn; Daniel S Gruner; Andy Hector; Johannes M H Knops; Andrew S MacDougall; Brett A Melbourne; John W Morgan; John L Orrock; Suzanne M Prober; Melinda D Smith
Journal:  Nature       Date:  2016-01-13       Impact factor: 49.962

2.  Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat.

Authors:  Ruth E Ley; J Kirk Harris; Joshua Wilcox; John R Spear; Scott R Miller; Brad M Bebout; Julia A Maresca; Donald A Bryant; Mitchell L Sogin; Norman R Pace
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

3.  Contribution to the Energetics of Evolution.

Authors:  A J Lotka
Journal:  Proc Natl Acad Sci U S A       Date:  1922-06       Impact factor: 11.205

4.  Laser ablation isotope ratio mass spectrometry for enhanced sensitivity and spatial resolution in stable isotope analysis.

Authors:  James J Moran; Matt K Newburn; M Lizabeth Alexander; Robert L Sams; James F Kelly; Helen W Kreuzer
Journal:  Rapid Commun Mass Spectrom       Date:  2011-05-15       Impact factor: 2.419

5.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

6.  Community structure of a microbial mat: the phylogenetic dimension.

Authors:  J B Risatti; W C Capman; D A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-11       Impact factor: 11.205

7.  The energy-diversity relationship of complex bacterial communities in Arctic deep-sea sediments.

Authors:  Christina Bienhold; Antje Boetius; Alban Ramette
Journal:  ISME J       Date:  2011-11-10       Impact factor: 10.302

8.  The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.

Authors:  Stephen R Lindemann; James J Moran; James C Stegen; Ryan S Renslow; Janine R Hutchison; Jessica K Cole; Alice C Dohnalkova; Julien Tremblay; Kanwar Singh; Stephanie A Malfatti; Feng Chen; Susannah G Tringe; Haluk Beyenal; James K Fredrickson
Journal:  Front Microbiol       Date:  2013-11-13       Impact factor: 5.640

9.  Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.

Authors:  Micah Hamady; Catherine Lozupone; Rob Knight
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

10.  Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Authors:  Jessica K Cole; Janine R Hutchison; Ryan S Renslow; Young-Mo Kim; William B Chrisler; Heather E Engelmann; Alice C Dohnalkova; Dehong Hu; Thomas O Metz; Jim K Fredrickson; Stephen R Lindemann
Journal:  Front Microbiol       Date:  2014-04-07       Impact factor: 5.640

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  13 in total

1.  Organismal and spatial partitioning of energy and macronutrient transformations within a hypersaline mat.

Authors:  Jennifer M Mobberley; Stephen R Lindemann; Hans C Bernstein; James J Moran; Ryan S Renslow; Jerome Babauta; Dehong Hu; Haluk Beyenal; William C Nelson
Journal:  FEMS Microbiol Ecol       Date:  2017-04-01       Impact factor: 4.194

2.  Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes.

Authors:  Hon Lun Wong; Richard Allen White; Pieter T Visscher; James C Charlesworth; Xabier Vázquez-Campos; Brendan P Burns
Journal:  ISME J       Date:  2018-07-06       Impact factor: 10.302

3.  Primary and heterotrophic productivity relate to multikingdom diversity in a hypersaline mat.

Authors:  Hans C Bernstein; Colin J Brislawn; Karl Dana; Tobias Flores-Wentz; Alexandra B Cory; Sarah J Fansler; James K Fredrickson; James J Moran
Journal:  FEMS Microbiol Ecol       Date:  2017-10-01       Impact factor: 4.194

4.  Ecological assessment of groundwater ecosystems disturbed by recharge systems using organic matter quality, biofilm characteristics, and bacterial diversity.

Authors:  Jérémy Voisin; Benoit Cournoyer; Laurence Marjolet; Antonin Vienney; Florian Mermillod-Blondin
Journal:  Environ Sci Pollut Res Int       Date:  2019-12-14       Impact factor: 4.223

5.  Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership.

Authors:  Hans C Bernstein; Ryan S McClure; Vera Thiel; Natalie C Sadler; Young-Mo Kim; William B Chrisler; Eric A Hill; Donald A Bryant; Margaret F Romine; Janet K Jansson; Jim K Fredrickson; Alexander S Beliaev
Journal:  mSystems       Date:  2017-03-07       Impact factor: 6.496

6.  Accuracy of taxonomy prediction for 16S rRNA and fungal ITS sequences.

Authors:  Robert C Edgar
Journal:  PeerJ       Date:  2018-04-18       Impact factor: 2.984

7.  Metagenomic Resolution of Functional Diversity in Copper Surface-Associated Marine Biofilms.

Authors:  Yimeng Zhang; Yan Ma; Ruiyong Zhang; Binbin Zhang; Xiaofan Zhai; Wangqiang Li; Liting Xu; Quantong Jiang; Jizhou Duan; Baorong Hou
Journal:  Front Microbiol       Date:  2019-12-11       Impact factor: 5.640

Review 8.  Interkingdom microbial consortia mechanisms to guide biotechnological applications.

Authors:  Shu Zhang; Nancy Merino; Akihiro Okamoto; Phillip Gedalanga
Journal:  Microb Biotechnol       Date:  2018-07-16       Impact factor: 5.813

9.  Environmental control on the distribution of metabolic strategies of benthic microbial mats in Lake Fryxell, Antarctica.

Authors:  Megan L Dillon; Ian Hawes; Anne D Jungblut; Tyler J Mackey; Jonathan A Eisen; Peter T Doran; Dawn Y Sumner
Journal:  PLoS One       Date:  2020-04-13       Impact factor: 3.240

10.  Energetic and Environmental Constraints on the Community Structure of Benthic Microbial Mats in Lake Fryxell, Antarctica.

Authors:  Megan L Dillon; Ian Hawes; Anne D Jungblut; Tyler J Mackey; Jonathan A Eisen; Peter T Doran; Dawn Y Sumner
Journal:  FEMS Microbiol Ecol       Date:  2020-02-01       Impact factor: 4.194

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