| Literature DB >> 27800161 |
Matt Ian Daniel Carter1, Kimberley A Bennett2, Clare B Embling1, Philip J Hosegood3, Debbie J F Russell4.
Abstract
In the last thirty years, the emergence and progression of biologging technology has led to great advances in marine predator ecology. Large databases of location and dive observations from biologging devices have been compiled for an increasing number of diving predator species (such as pinnipeds, sea turtles, seabirds and cetaceans), enabling complex questions about animal activity budgets and habitat use to be addressed. Central to answering these questions is our ability to correctly identify and quantify the frequency of essential behaviours, such as foraging. Despite technological advances that have increased the quality and resolution of location and dive data, accurately interpreting behaviour from such data remains a challenge, and analytical methods are only beginning to unlock the full potential of existing datasets. This review evaluates both traditional and emerging methods and presents a starting platform of options for future studies of marine predator foraging ecology, particularly from location and two-dimensional (time-depth) dive data. We outline the different devices and data types available, discuss the limitations and advantages of commonly-used analytical techniques, and highlight key areas for future research. We focus our review on pinnipeds - one of the most studied taxa of marine predators - but offer insights that will be applicable to other air-breathing marine predator tracking studies. We highlight that traditionally-used methods for inferring foraging from location and dive data, such as first-passage time and dive shape analysis, have important caveats and limitations depending on the nature of the data and the research question. We suggest that more holistic statistical techniques, such as state-space models, which can synthesise multiple track, dive and environmental metrics whilst simultaneously accounting for measurement error, offer more robust alternatives. Finally, we identify a need for more research to elucidate the role of physical oceanography, device effects, study animal selection, and developmental stages in predator behaviour and data interpretation.Entities:
Keywords: Animal tracking; Area-restricted search; Argos; GPS; Marine mammals; Movement ecology; Satellite telemetry; Seals; TDR
Year: 2016 PMID: 27800161 PMCID: PMC5080796 DOI: 10.1186/s40462-016-0090-9
Source DB: PubMed Journal: Mov Ecol ISSN: 2051-3933 Impact factor: 3.600
Fig. 1Biologging device deployments. a Lactating female Galápagos sea lion (Zalophus wollebaeki) with archival GPS and TDR loggers. Archival loggers are favoured for tropical species as Argos satellite coverage is poor near the equator. VHF transmitter aids re-encounter on the colony for device retrieval. Coded mark-recapture tag shown in the fore-flipper (photo: Jana Jeglinski). b Lactating female Antarctic fur seal (Arctocephalus gazella) with archival video camera (photo: Sascha Hooker). c Argos-CTD telemetry tag deployed on a southern elephant seal (Mirounga leonina) in West Antarctica. This device records both movement and environmental data simultaneously and transmits the data via polar-orbiting satellites, offering valuable data for ecologists and oceanographers alike (photo: Mike Fedak). d GPS-GSM phone telemetry tag deployed on a harbour seal (Phoca vitulina) in the North Sea. These devices are a good option for species that frequent coastal waters in less-remote regions (photo: Sea Mammal Research Unit). Note: for scale, devices pictured in (c) and (d) are roughly the same size
Commonly-used tracking devices
| Device | Examples | Location Derivation | Data Transmission | Common Applications | Typical Batt. Dur. | Approx. Weight (g) | Advantages | Disadvantages | References |
|---|---|---|---|---|---|---|---|---|---|
| Radio tag (Fig. | Mariner Radar (early studies); Advanced Telemetry Systems MM100 Series | Very High Frequency (VHF) or Ultra High Frequency (UHF) | Acoustic telemetry: radio signal (VHF/UHF) | Early pinniped studies. Short range studies. Relocation for data logger retrieval. | 6–12 months | 80-200 (early studies); 30 | Smaller & lighter than Argos/GPS units. No need to retrieve. Can be used to re-encounter specific individuals on a colony for recovery of archival devices (Fig. | Device must be in line-of-sight range of base station(s) and/or mobile receiver(s) to record locations. Signal can be interrupted by terrain. | [ |
| GPS Logger (Fig. | Sirtrack F1G | Fastloc ® GPS | Archival | Mainly individuals with restricted ranges (e.g. lactating female otariids during pup provisioning). | 3 weeks – 6 months | 215 | Fast and accurate location estimates. Lighter than telemetry units. Salt-water switch turns the tag off when the animal dives/hauls out to extend battery life. | Must be recovered to extract data, therefore often needs to be deployed in conjunction with VHF transmitter to facilitate re-encounter on the colony. Study limited to specific timescales (e.g. pre-moult/breeding season). | [ |
| Argos relay tags (Fig. | SMRU 9000x SRDL; Wildlife Computers Mk10 SPLASH Tag; Sirtrack KiwiSat 101; Telonics ST-10 PTT | Argos | Argos | Very widely used. Long-ranging pelagic pinnipeds in remote locations. | 12 months (depending on power options and duty cycle). | 370 | Can integrate other sensors such as wet-dry, CTD, or accelerometer. Useful in remote areas where no GSM coverage available. Complete data record can be retrieved if tag recovered. Better coverage in polar regions. | Not all locations & dives transmitted. Data often patchy due to interrupted transmissions. Location estimates can carry high spatial error. Fine-scale reconstruction of movement not possible. Argos coverage poor in areas closer to equator. | [ |
| GPS relay tags | SMRU GPS SRDL; Wildlife Computers Mk10 SPLASH Tag | Fastloc ® GPS | Argos | Individuals in remote locations with no GSM coverage or prospect of device retrieval. | 3-6 months (depending on power options and duty cycle). | 370 | As Argos relay tag (above). Solar powered option for extended battery life. Fast and accurate location estimates across most of the globe. Can integrate TDR. | Not all locations & dives transmitted. Data often patchy due to interrupted transmissions. Argos coverage poor in areas closer to equator. | [ |
| GPS-GSM (Fig. | SMRU GPS Phone Tag | Fastloc ® GPS | GSM (FTP/SMS) | Pinnipeds in non-remote locations (with GSM coverage). | 1–12 months (depending on power options and duty cycle). | 370 | Many power options including solar panel. All dives and locations can be transmitted. Fast and accurate location estimates across most of the globe. | Individual must enter GSM range in order to transmit data (time lag in data retrieval). Not useful in remote locations. If tag detached at sea before entering GSM range data are lost. | [ |
Battery duration and tag weights are given as a rough indication but are highly dependent on device configuration. References are given to indicate some examples of the application of each device. This table aims to give an overview of commonly-used tagging systems but is in no way exhaustive. Note: most devices, if recovered, can be re-charged, re-programmed and re-deployed. However, due to the low probability of retrieval in many cases, relay devices are generally considered single-use
Fig. 2Location detection and transmission methods. a Argos satellite tags (adapted from [46]) and b GPS-GSM phone tags. Yellow dots represent locations where the tag is at the surface and a location fix is derived. Tag graphics: [60]
Fig. 3Dive data. a Diagram of depth data collected at regular intervals throughout a dive (grey dashed line) and abstracted to inflection points for low resolution (blue dots) and high resolution (green dots) data. This abstraction may be performed using an algorithm on-board the device to reduce the amount of data stored and transmitted. b Different 2D dive profiles abstracted from dive data are often used to infer behaviour in seals. c Hypothetical example of how stomach temperature telemetry (STT) (top trace) can be used to validate assumptions of foraging inferred from dive profiles (bottom trace). Based on [15], Fig. 1. Arrow denotes feeding event, identified by sharp drop in stomach temperature
Fig. 4Track metrics. Diagram of successive hypothetical location fixes through (a) time and (b) space. a In order to calculate changes in track metrics through time, it is often necessary to regularise recorded ‘fixes’ (locations) to a constant time step. The resulting regularised fixes are normally connected in space with linear interpolation. b Diagram shows two metrics commonly used in movement analyses. Change in bearing (turning angle) is a measure of path sinuosity, whilst the displacement distance between temporally-regularised location fixes can give an estimate of ground speed. By examining changes to these metrics over time different movement patterns can be identified
Fig. 5Analytical methods for horizontal movement data. Diagrams show hypothetical track of a central place forager, star represents central place. a Two patterns of movement can typically be detected in predator tracks; extensive movements with high displacement and low turning angle (grey lines) and intensive movements with low displacement and high turning angles (blue lines). Intensive movements are commonly taken to represent area-restricted search (ARS) behaviour. b Fist-passage time (FPT) is the sum of temporally-regularised location fixes required to leave a circle of given radius in both forward and backward directions from time point t (yellow dots). Residence time (RT) includes total time spent in the circle from present (iii-iv), previous (i-ii) and future (v-vi) time steps (green lines), provided that time outside the circle (gap between intersection points ii-iii or between iv-v) is not above a user-defined threshold. c Areas of high FPT / RT can be identified by sliding the circle along the track at each time step. Red dashes denote the areas in space (left) and time (right) taken to represent ARS. d Demonstration of a three-state HMM output. Right-hand plot shows posterior Weibull distributions of displacement for three discrete states. Using biological rationale, movement states can be used to infer behaviours (e.g. state 3 with high displacement may be travelling, states 1 and 2 may be either foraging or resting). Presence/absence of diving can be included in the model to distinguish between foraging and resting at the surface [121]
Fig. 6Choosing the right analytical method. Choosing the appropriate analytical method will depend upon careful consideration of some key aspects of the study. Key aspects are given in bold, subsequent considerations are shown in parentheses