Literature DB >> 27798295

Spatial evolutionary epidemiology of spreading epidemics.

S Lion1, S Gandon2.   

Abstract

Most spatial models of host-parasite interactions either neglect the possibility of pathogen evolution or consider that this process is slow enough for epidemiological dynamics to reach an equilibrium on a fast timescale. Here, we propose a novel approach to jointly model the epidemiological and evolutionary dynamics of spatially structured host and pathogen populations. Starting from a multi-strain epidemiological model, we use a combination of spatial moment equations and quantitative genetics to analyse the dynamics of mean transmission and virulence in the population. A key insight of our approach is that, even in the absence of long-term evolutionary consequences, spatial structure can affect the short-term evolution of pathogens because of the build-up of spatial differentiation in mean virulence. We show that spatial differentiation is driven by a balance between epidemiological and genetic effects, and this quantity is related to the effect of kin competition discussed in previous studies of parasite evolution in spatially structured host populations. Our analysis can be used to understand and predict the transient evolutionary dynamics of pathogens and the emergence of spatial patterns of phenotypic variation.
© 2016 The Author(s).

Keywords:  kin selection; short-term evolution; spatial structure; virulence

Mesh:

Year:  2016        PMID: 27798295      PMCID: PMC5095374          DOI: 10.1098/rspb.2016.1170

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  34 in total

1.  Emergent trade-offs and selection for outbreak frequency in spatial epidemics.

Authors:  W Marijn van Ballegooijen; Maarten C Boerlijst
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-16       Impact factor: 11.205

2.  Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'.

Authors:  Benjamin Kerr; Claudia Neuhauser; Brendan J M Bohannan; Antony M Dean
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

3.  The evolutionary epidemiology of vaccination.

Authors:  Sylvain Gandon; Troy Day
Journal:  J R Soc Interface       Date:  2007-10-22       Impact factor: 4.118

4.  Relatedness in spatially structured populations with empty sites: An approach based on spatial moment equations.

Authors:  Sébastien Lion
Journal:  J Theor Biol       Date:  2009-06-06       Impact factor: 2.691

Review 5.  The consequences of spatial structure for the evolution of pathogen transmission rate and virulence.

Authors:  Susanna M Messinger; Annette Ostling
Journal:  Am Nat       Date:  2009-10       Impact factor: 3.926

Review 6.  Evolution of spatially structured host-parasite interactions.

Authors:  S Lion; S Gandon
Journal:  J Evol Biol       Date:  2015-01-08       Impact factor: 2.411

Review 7.  Forecasting Epidemiological and Evolutionary Dynamics of Infectious Diseases.

Authors:  Sylvain Gandon; Troy Day; C Jessica E Metcalf; Bryan T Grenfell
Journal:  Trends Ecol Evol       Date:  2016-08-24       Impact factor: 17.712

8.  The evolutionary epidemiology of multilocus drug resistance.

Authors:  Troy Day; Sylvain Gandon
Journal:  Evolution       Date:  2012-01-03       Impact factor: 3.694

9.  Evolution and emergence of infectious diseases in theoretical and real-world networks.

Authors:  Gabriel E Leventhal; Alison L Hill; Martin A Nowak; Sebastian Bonhoeffer
Journal:  Nat Commun       Date:  2015-01-16       Impact factor: 14.919

Review 10.  Modeling infectious disease dynamics in the complex landscape of global health.

Authors:  Hans Heesterbeek; Roy M Anderson; Viggo Andreasen; Shweta Bansal; Daniela De Angelis; Chris Dye; Ken T D Eames; W John Edmunds; Simon D W Frost; Sebastian Funk; T Deirdre Hollingsworth; Thomas House; Valerie Isham; Petra Klepac; Justin Lessler; James O Lloyd-Smith; C Jessica E Metcalf; Denis Mollison; Lorenzo Pellis; Juliet R C Pulliam; Mick G Roberts; Cecile Viboud
Journal:  Science       Date:  2015-03-13       Impact factor: 47.728

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  9 in total

Review 1.  Ecological and evolutionary dynamics of multi-strain RNA viruses.

Authors:  Dennis N Makau; Samantha Lycett; Matthew Michalska-Smith; Igor A D Paploski; Maxim C-J Cheeran; Meggan E Craft; Rowland R Kao; Declan C Schroeder; Andrea Doeschl-Wilson; Kimberly VanderWaal
Journal:  Nat Ecol Evol       Date:  2022-09-22       Impact factor: 19.100

2.  Epidemic spreading under mutually independent intra- and inter-host pathogen evolution.

Authors:  Stefano Boccaletti; Baruch Barzel; Xiyun Zhang; Zhongyuan Ruan; Muhua Zheng; Jie Zhou
Journal:  Nat Commun       Date:  2022-10-20       Impact factor: 17.694

Review 3.  Causes and Consequences of Spatial Within-Host Viral Spread.

Authors:  Molly E Gallagher; Christopher B Brooke; Ruian Ke; Katia Koelle
Journal:  Viruses       Date:  2018-11-13       Impact factor: 5.048

4.  Host contact dynamics shapes richness and dominance of pathogen strains.

Authors:  Francesco Pinotti; Éric Fleury; Didier Guillemot; Pierre-Yves Böelle; Chiara Poletto
Journal:  PLoS Comput Biol       Date:  2019-05-21       Impact factor: 4.475

5.  Infection in patchy populations: Contrasting pathogen invasion success and dispersal at varying times since host colonization.

Authors:  Louise S Nørgaard; Ben L Phillips; Matthew D Hall
Journal:  Evol Lett       Date:  2019-09-24

6.  Evolution of Human Respiratory Virus Epidemics.

Authors:  Nash D Rochman; Yuri I Wolf; Eugene V Koonin
Journal:  medRxiv       Date:  2020-11-24

7.  Evolution of class-structured populations in periodic environments.

Authors:  Sébastien Lion; Sylvain Gandon
Journal:  Evolution       Date:  2022-07-01       Impact factor: 4.171

8.  Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens.

Authors:  Loup Rimbaud; Julien Papaïx; Jean-François Rey; Luke G Barrett; Peter H Thrall
Journal:  PLoS Comput Biol       Date:  2018-04-12       Impact factor: 4.475

9.  Pathogen evolution in finite populations: slow and steady spreads the best.

Authors:  Todd L Parsons; Amaury Lambert; Troy Day; Sylvain Gandon
Journal:  J R Soc Interface       Date:  2018-10-03       Impact factor: 4.118

  9 in total

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