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Literature DB >> 27797782

ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability.

Mark C Hiner¹, Curtis T Rueden¹, Kevin W Eliceiri^1,2.

Abstract

Summary: ImageJ-MATLAB is a lightweight Java library facilitating bi-directional interoperability between MATLAB and ImageJ. By defining a standard for translation between matrix and image data structures, researchers are empowered to select the best tool for their image-analysis tasks. Availability and Implementation: Freely available extension to ImageJ2 ( http://imagej.net/Downloads ). Installation and use instructions available at http://imagej.net/MATLAB_Scripting. Tested with ImageJ 2.0.0-rc-54 , Java 1.8.0_66 and MATLAB R2015b. Contact: eliceiri@wisc.edu. Supplementary information: Supplementary data are available at Bioinformatics online.

Mesh：

Year: 2017 PMID： 27797782 PMCID： PMC6041959 DOI： 10.1093/bioinformatics/btw681

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

3 in total

Review 1. The ImageJ ecosystem: An open platform for biomedical image analysis.

Authors: Johannes Schindelin; Curtis T Rueden; Mark C Hiner; Kevin W Eliceiri
Journal: Mol Reprod Dev Date: 2015-07-07 Impact factor: 2.609

2. NIH Image to ImageJ: 25 years of image analysis.

Authors: Caroline A Schneider; Wayne S Rasband; Kevin W Eliceiri
Journal: Nat Methods Date: 2012-07 Impact factor: 28.547

3. ImgLib2--generic image processing in Java.

Authors: Tobias Pietzsch; Stephan Preibisch; Pavel Tomancák; Stephan Saalfeld
Journal: Bioinformatics Date: 2012-09-08 Impact factor: 6.937

3 in total

7 in total

1. New Extensibility and Scripting Tools in the ImageJ Ecosystem.

Authors: Niklas A Gahm; Curtis T Rueden; Edward L Evans; Gabriel Selzer; Mark C Hiner; Jenu V Chacko; Dasong Gao; Nathan M Sherer; Kevin W Eliceiri
Journal: Curr Protoc Date: 2021-08

2. ImageJ2: ImageJ for the next generation of scientific image data.

Authors: Curtis T Rueden; Johannes Schindelin; Mark C Hiner; Barry E DeZonia; Alison E Walter; Ellen T Arena; Kevin W Eliceiri
Journal: BMC Bioinformatics Date: 2017-11-29 Impact factor: 3.169

3. Comparative analysis of tissue reconstruction algorithms for 3D histology.

Authors: Kimmo Kartasalo; Leena Latonen; Jorma Vihinen; Tapio Visakorpi; Matti Nykter; Pekka Ruusuvuori
Journal: Bioinformatics Date: 2018-09-01 Impact factor: 6.937

4. Spatiotemporal Characterizations of Spontaneously Beating Cardiomyocytes with Adaptive Reference Digital Image Correlation.

Authors: Akankshya Shradhanjali; Brandon D Riehl; Bin Duan; Ruiguo Yang; Jung Yul Lim
Journal: Sci Rep Date: 2019-12-05 Impact factor: 4.379

5. Cellular correlates of gray matter volume changes in magnetic resonance morphometry identified by two-photon microscopy.

Authors: Livia Asan; Claudia Falfán-Melgoza; Carlo A Beretta; Markus Sack; Lei Zheng; Wolfgang Weber-Fahr; Thomas Kuner; Johannes Knabbe
Journal: Sci Rep Date: 2021-02-19 Impact factor: 4.379

6. OCTAVA: An open-source toolbox for quantitative analysis of optical coherence tomography angiography images.

Authors: Gavrielle R Untracht; Rolando S Matos; Nikolaos Dikaios; Mariam Bapir; Abdullah K Durrani; Teemapron Butsabong; Paola Campagnolo; David D Sampson; Christian Heiss; Danuta M Sampson
Journal: PLoS One Date: 2021-12-09 Impact factor: 3.240

7. Unraveling Functional Diversity of Cortical Synaptic Architecture Through the Lens of Population Coding.

Authors: Jacob L Yates; Benjamin Scholl
Journal: Front Synaptic Neurosci Date: 2022-07-26

7 in total