Literature DB >> 27794210

Small-angle scattering studies of intrinsically disordered proteins and their complexes.

Tiago N Cordeiro1, Fátima Herranz-Trillo2, Annika Urbanek1, Alejandro Estaña3, Juan Cortés4, Nathalie Sibille1, Pau Bernadó5.   

Abstract

Intrinsically Disordered Proteins (IDPs) perform a broad range of biological functions. Their relevance has motivated intense research activity seeking to characterize their sequence/structure/function relationships. However, the conformational plasticity of these molecules hampers the application of traditional structural approaches, and new tools and concepts are being developed to address the challenges they pose. Small-Angle Scattering (SAS) is a structural biology technique that probes the size and shape of disordered proteins and their complexes with other biomolecules. The low-resolution nature of SAS can be compensated with specially designed computational tools and its combined interpretation with complementary structural information. In this review, we describe recent advances in the application of SAS to disordered proteins and highly flexible complexes and discuss current challenges.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 27794210     DOI: 10.1016/j.sbi.2016.10.011

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  18 in total

1.  Extensive tests and evaluation of the CHARMM36IDPSFF force field for intrinsically disordered proteins and folded proteins.

Authors:  Hao Liu; Dong Song; Yangpeng Zhang; Sheng Yang; Ray Luo; Hai-Feng Chen
Journal:  Phys Chem Chem Phys       Date:  2019-10-09       Impact factor: 3.676

2.  The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins.

Authors:  Dong Song; Ray Luo; Hai-Feng Chen
Journal:  J Chem Inf Model       Date:  2017-05-04       Impact factor: 4.956

3.  Deciphering the "Fuzzy" Interaction of FG Nucleoporins and Transport Factors Using Small-Angle Neutron Scattering.

Authors:  Samuel Sparks; Deniz B Temel; Michael P Rout; David Cowburn
Journal:  Structure       Date:  2018-02-08       Impact factor: 5.006

4.  From Fuzzy to Function: The New Frontier of Protein-Protein Interactions.

Authors:  Rachel Pricer; Jason E Gestwicki; Anna K Mapp
Journal:  Acc Chem Res       Date:  2017-03-21       Impact factor: 22.384

5.  Self-Organization of FtsZ Polymers in Solution Reveals Spacer Role of the Disordered C-Terminal Tail.

Authors:  Sonia Huecas; Erney Ramírez-Aportela; Albert Vergoñós; Rafael Núñez-Ramírez; Oscar Llorca; J Fernando Díaz; David Juan-Rodríguez; María A Oliva; Patricia Castellen; José M Andreu
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

6.  Structural Analyses of Intrinsically Disordered Proteins by Small-Angle X-Ray Scattering.

Authors:  Amin Sagar; Dmitri Svergun; Pau Bernadó
Journal:  Methods Mol Biol       Date:  2020

Review 7.  (S)Pinning down protein interactions by NMR.

Authors:  Kaare Teilum; Micha Ben Achim Kunze; Simon Erlendsson; Birthe B Kragelund
Journal:  Protein Sci       Date:  2017-02-14       Impact factor: 6.725

8.  Intrinsic disorder in the regulatory N-terminal domain of diacylglycerol acyltransferase 1 from Brassica napus.

Authors:  Rashmi Panigrahi; Tsutomu Matsui; Andrew H Song; Kristian Mark P Caldo; Howard S Young; Randall J Weselake; M Joanne Lemieux
Journal:  Sci Rep       Date:  2018-11-12       Impact factor: 4.379

9.  SAXS-guided Enhanced Unbiased Sampling for Structure Determination of Proteins and Complexes.

Authors:  Chuankai Zhao; Diwakar Shukla
Journal:  Sci Rep       Date:  2018-12-10       Impact factor: 4.379

Review 10.  Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics.

Authors:  Ashutosh Srivastava; Tetsuro Nagai; Arpita Srivastava; Osamu Miyashita; Florence Tama
Journal:  Int J Mol Sci       Date:  2018-10-30       Impact factor: 5.923

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