Literature DB >> 27793332

Enhancing the Informativeness and Replicability of Imaging Genomics Studies.

Cameron S Carter1, Carrie E Bearden2, Edward T Bullmore3, Daniel H Geschwind4, David C Glahn2, Raquel E Gur5, Andreas Meyer-Lindenberg6, Daniel R Weinberger7.   

Abstract

Imaging genomics is a new field of investigation that seeks to gain insights into the impact of human genetic variation on the structure, chemistry, and function of neural systems in health and disease. Because publications in this field have increased over the past decade, increasing concerns have been raised about false-positive results entering the literature. Here, we provide an overview of the field of imaging genomic and genetic approaches and discuss factors related to research design and analysis that can enhance the informativeness and replicability of these studies. We conclude that imaging genetic studies can provide important insights into the role of human genetic variation on neural systems and circuits, both in the context of normal quantitative variation and in relation to neuropsychiatric disease. We also argue that demonstrating genetic association to imaging-derived traits is subject to the same constraints as any other genetic study, including stringent type I error control. Adequately powered studies are necessary; however, there are currently limited data available to allow precise estimates of effect sizes for candidate gene studies. Independent replication is necessary before a result can be considered definitive, and for studies with small sample sizes it is necessary before publication. Increased transparency of methods and enhanced data sharing will further enhance replicability.
Copyright © 2016 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Clinical confounds; Imaging genomics; Multiple comparisons; Replication; Sample size; Statistical power

Mesh:

Year:  2016        PMID: 27793332      PMCID: PMC5318285          DOI: 10.1016/j.biopsych.2016.08.019

Source DB:  PubMed          Journal:  Biol Psychiatry        ISSN: 0006-3223            Impact factor:   13.382


  52 in total

Review 1.  Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies.

Authors:  Gary H Glover; Bryon A Mueller; Jessica A Turner; Theo G M van Erp; Thomas T Liu; Douglas N Greve; James T Voyvodic; Jerod Rasmussen; Gregory G Brown; David B Keator; Vince D Calhoun; Hyo Jong Lee; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; Syam Gadde; Adrian Preda; Kelvin O Lim; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  J Magn Reson Imaging       Date:  2012-02-07       Impact factor: 4.813

2.  Spurious genetic associations.

Authors:  Patrick F Sullivan
Journal:  Biol Psychiatry       Date:  2007-03-08       Impact factor: 13.382

3.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

Review 4.  Power failure: why small sample size undermines the reliability of neuroscience.

Authors:  Katherine S Button; John P A Ioannidis; Claire Mokrysz; Brian A Nosek; Jonathan Flint; Emma S J Robinson; Marcus R Munafò
Journal:  Nat Rev Neurosci       Date:  2013-04-10       Impact factor: 34.870

5.  Strong association of de novo copy number mutations with autism.

Authors:  Jonathan Sebat; B Lakshmi; Dheeraj Malhotra; Jennifer Troge; Christa Lese-Martin; Tom Walsh; Boris Yamrom; Seungtai Yoon; Alex Krasnitz; Jude Kendall; Anthony Leotta; Deepa Pai; Ray Zhang; Yoon-Ha Lee; James Hicks; Sarah J Spence; Annette T Lee; Kaija Puura; Terho Lehtimäki; David Ledbetter; Peter K Gregersen; Joel Bregman; James S Sutcliffe; Vaidehi Jobanputra; Wendy Chung; Dorothy Warburton; Mary-Claire King; David Skuse; Daniel H Geschwind; T Conrad Gilliam; Kenny Ye; Michael Wigler
Journal:  Science       Date:  2007-03-15       Impact factor: 47.728

Review 6.  Widespread cortical dysfunction in schizophrenia: the FBIRN imaging consortium.

Authors:  Steven G Potkin; Judith M Ford
Journal:  Schizophr Bull       Date:  2008-11-20       Impact factor: 9.306

Review 7.  What is the impact of genome-wide supported risk variants for schizophrenia and bipolar disorder on brain structure and function? A systematic review.

Authors:  R Gurung; D P Prata
Journal:  Psychol Med       Date:  2015-04-10       Impact factor: 7.723

8.  Common genetic variants influence human subcortical brain structures.

Authors:  Derrek P Hibar; Jason L Stein; Miguel E Renteria; Alejandro Arias-Vasquez; Sylvane Desrivières; Neda Jahanshad; Roberto Toro; Katharina Wittfeld; Lucija Abramovic; Micael Andersson; Benjamin S Aribisala; Nicola J Armstrong; Manon Bernard; Marc M Bohlken; Marco P Boks; Janita Bralten; Andrew A Brown; M Mallar Chakravarty; Qiang Chen; Christopher R K Ching; Gabriel Cuellar-Partida; Anouk den Braber; Sudheer Giddaluru; Aaron L Goldman; Oliver Grimm; Tulio Guadalupe; Johanna Hass; Girma Woldehawariat; Avram J Holmes; Martine Hoogman; Deborah Janowitz; Tianye Jia; Sungeun Kim; Marieke Klein; Bernd Kraemer; Phil H Lee; Loes M Olde Loohuis; Michelle Luciano; Christine Macare; Karen A Mather; Manuel Mattheisen; Yuri Milaneschi; Kwangsik Nho; Martina Papmeyer; Adaikalavan Ramasamy; Shannon L Risacher; Roberto Roiz-Santiañez; Emma J Rose; Alireza Salami; Philipp G Sämann; Lianne Schmaal; Andrew J Schork; Jean Shin; Lachlan T Strike; Alexander Teumer; Marjolein M J van Donkelaar; Kristel R van Eijk; Raymond K Walters; Lars T Westlye; Christopher D Whelan; Anderson M Winkler; Marcel P Zwiers; Saud Alhusaini; Lavinia Athanasiu; Stefan Ehrlich; Marina M H Hakobjan; Cecilie B Hartberg; Unn K Haukvik; Angelien J G A M Heister; David Hoehn; Dalia Kasperaviciute; David C M Liewald; Lorna M Lopez; Remco R R Makkinje; Mar Matarin; Marlies A M Naber; D Reese McKay; Margaret Needham; Allison C Nugent; Benno Pütz; Natalie A Royle; Li Shen; Emma Sprooten; Daniah Trabzuni; Saskia S L van der Marel; Kimm J E van Hulzen; Esther Walton; Christiane Wolf; Laura Almasy; David Ames; Sampath Arepalli; Amelia A Assareh; Mark E Bastin; Henry Brodaty; Kazima B Bulayeva; Melanie A Carless; Sven Cichon; Aiden Corvin; Joanne E Curran; Michael Czisch; Greig I de Zubicaray; Allissa Dillman; Ravi Duggirala; Thomas D Dyer; Susanne Erk; Iryna O Fedko; Luigi Ferrucci; Tatiana M Foroud; Peter T Fox; Masaki Fukunaga; J Raphael Gibbs; Harald H H Göring; Robert C Green; Sebastian Guelfi; Narelle K Hansell; Catharina A Hartman; Katrin Hegenscheid; Andreas Heinz; Dena G Hernandez; Dirk J Heslenfeld; Pieter J Hoekstra; Florian Holsboer; Georg Homuth; Jouke-Jan Hottenga; Masashi Ikeda; Clifford R Jack; Mark Jenkinson; Robert Johnson; Ryota Kanai; Maria Keil; Jack W Kent; Peter Kochunov; John B Kwok; Stephen M Lawrie; Xinmin Liu; Dan L Longo; Katie L McMahon; Eva Meisenzahl; Ingrid Melle; Sebastian Mohnke; Grant W Montgomery; Jeanette C Mostert; Thomas W Mühleisen; Michael A Nalls; Thomas E Nichols; Lars G Nilsson; Markus M Nöthen; Kazutaka Ohi; Rene L Olvera; Rocio Perez-Iglesias; G Bruce Pike; Steven G Potkin; Ivar Reinvang; Simone Reppermund; Marcella Rietschel; Nina Romanczuk-Seiferth; Glenn D Rosen; Dan Rujescu; Knut Schnell; Peter R Schofield; Colin Smith; Vidar M Steen; Jessika E Sussmann; Anbupalam Thalamuthu; Arthur W Toga; Bryan J Traynor; Juan Troncoso; Jessica A Turner; Maria C Valdés Hernández; Dennis van 't Ent; Marcel van der Brug; Nic J A van der Wee; Marie-Jose van Tol; Dick J Veltman; Thomas H Wassink; Eric Westman; Ronald H Zielke; Alan B Zonderman; David G Ashbrook; Reinmar Hager; Lu Lu; Francis J McMahon; Derek W Morris; Robert W Williams; Han G Brunner; Randy L Buckner; Jan K Buitelaar; Wiepke Cahn; Vince D Calhoun; Gianpiero L Cavalleri; Benedicto Crespo-Facorro; Anders M Dale; Gareth E Davies; Norman Delanty; Chantal Depondt; Srdjan Djurovic; Wayne C Drevets; Thomas Espeseth; Randy L Gollub; Beng-Choon Ho; Wolfgang Hoffmann; Norbert Hosten; René S Kahn; Stephanie Le Hellard; Andreas Meyer-Lindenberg; Bertram Müller-Myhsok; Matthias Nauck; Lars Nyberg; Massimo Pandolfo; Brenda W J H Penninx; Joshua L Roffman; Sanjay M Sisodiya; Jordan W Smoller; Hans van Bokhoven; Neeltje E M van Haren; Henry Völzke; Henrik Walter; Michael W Weiner; Wei Wen; Tonya White; Ingrid Agartz; Ole A Andreassen; John Blangero; Dorret I Boomsma; Rachel M Brouwer; Dara M Cannon; Mark R Cookson; Eco J C de Geus; Ian J Deary; Gary Donohoe; Guillén Fernández; Simon E Fisher; Clyde Francks; David C Glahn; Hans J Grabe; Oliver Gruber; John Hardy; Ryota Hashimoto; Hilleke E Hulshoff Pol; Erik G Jönsson; Iwona Kloszewska; Simon Lovestone; Venkata S Mattay; Patrizia Mecocci; Colm McDonald; Andrew M McIntosh; Roel A Ophoff; Tomas Paus; Zdenka Pausova; Mina Ryten; Perminder S Sachdev; Andrew J Saykin; Andy Simmons; Andrew Singleton; Hilkka Soininen; Joanna M Wardlaw; Michael E Weale; Daniel R Weinberger; Hieab H H Adams; Lenore J Launer; Stephan Seiler; Reinhold Schmidt; Ganesh Chauhan; Claudia L Satizabal; James T Becker; Lisa Yanek; Sven J van der Lee; Maritza Ebling; Bruce Fischl; W T Longstreth; Douglas Greve; Helena Schmidt; Paul Nyquist; Louis N Vinke; Cornelia M van Duijn; Luting Xue; Bernard Mazoyer; Joshua C Bis; Vilmundur Gudnason; Sudha Seshadri; M Arfan Ikram; Nicholas G Martin; Margaret J Wright; Gunter Schumann; Barbara Franke; Paul M Thompson; Sarah E Medland
Journal:  Nature       Date:  2015-01-21       Impact factor: 49.962

Review 9.  Assessing the utility of intermediate phenotypes for genetic mapping of psychiatric disease.

Authors:  Jonathan Flint; Nicholas Timpson; Marcus Munafò
Journal:  Trends Neurosci       Date:  2014-09-09       Impact factor: 13.837

10.  Toward the future of psychiatric diagnosis: the seven pillars of RDoC.

Authors:  Bruce N Cuthbert; Thomas R Insel
Journal:  BMC Med       Date:  2013-05-14       Impact factor: 8.775

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  16 in total

1.  Cognitive Control, the Anterior Cingulate, and Nicotinic Receptors: A Case of Heterozygote Advantage.

Authors:  Jason Smucny
Journal:  J Neurosci       Date:  2018-01-10       Impact factor: 6.167

2.  The Translational Potential of Neuroimaging Genomic Analyses To Diagnosis And Treatment In The Mental Disorders.

Authors:  Jiayu Chen; Jingyu Liu; Vince D Calhoun
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-05-09       Impact factor: 10.961

Review 3.  Cognitive genomics: Searching for the genetic roots of neuropsychological functioning.

Authors:  Carrie E Bearden; David C Glahn
Journal:  Neuropsychology       Date:  2017-11       Impact factor: 3.295

Review 4.  Imaging Genetics and Genomics in Psychiatry: A Critical Review of Progress and Potential.

Authors:  Ryan Bogdan; Betty Jo Salmeron; Caitlin E Carey; Arpana Agrawal; Vince D Calhoun; Hugh Garavan; Ahmad R Hariri; Andreas Heinz; Matthew N Hill; Andrew Holmes; Ned H Kalin; David Goldman
Journal:  Biol Psychiatry       Date:  2017-01-13       Impact factor: 13.382

5.  Imaging genetics paradigms in depression research: Systematic review and meta-analysis.

Authors:  Lícia P Pereira; Cristiano A Köhler; Brendon Stubbs; Kamilla W Miskowiak; Gerwyn Morris; Bárbara P de Freitas; Trevor Thompson; Brisa S Fernandes; André R Brunoni; Michael Maes; Diego A Pizzagalli; André F Carvalho
Journal:  Prog Neuropsychopharmacol Biol Psychiatry       Date:  2018-05-17       Impact factor: 5.067

Review 6.  Neuroimaging in Schizophrenia.

Authors:  Matcheri S Keshavan; Guusje Collin; Synthia Guimond; Sinead Kelly; Konasale M Prasad; Paulo Lizano
Journal:  Neuroimaging Clin N Am       Date:  2019-11-11       Impact factor: 2.264

7.  Dentate gyrus volume deficit in schizophrenia.

Authors:  Soichiro Nakahara; Jessica A Turner; Vince D Calhoun; Kelvin O Lim; Bryon Mueller; Juan R Bustillo; Daniel S O'Leary; Sarah McEwen; James Voyvodic; Aysenil Belger; Daniel H Mathalon; Judith M Ford; Fabio Macciardi; Mitsuyuki Matsumoto; Steven G Potkin; Theo G M van Erp
Journal:  Psychol Med       Date:  2019-06-03       Impact factor: 7.723

Review 8.  Neuroimaging genomics in psychiatry-a translational approach.

Authors:  Mary S Mufford; Dan J Stein; Shareefa Dalvie; Nynke A Groenewold; Paul M Thompson; Neda Jahanshad
Journal:  Genome Med       Date:  2017-11-27       Impact factor: 11.117

Review 9.  Dissecting diagnostic heterogeneity in depression by integrating neuroimaging and genetics.

Authors:  Amanda M Buch; Conor Liston
Journal:  Neuropsychopharmacology       Date:  2020-08-11       Impact factor: 8.294

10.  A polygenic risk score analysis of psychosis endophenotypes across brain functional, structural, and cognitive domains.

Authors:  Siri Ranlund; Stella Calafato; Johan H Thygesen; Kuang Lin; Wiepke Cahn; Benedicto Crespo-Facorro; Sonja M C de Zwarte; Álvaro Díez; Marta Di Forti; Conrad Iyegbe; Assen Jablensky; Rebecca Jones; Mei-Hua Hall; Rene Kahn; Luba Kalaydjieva; Eugenia Kravariti; Colm McDonald; Andrew M McIntosh; Andrew McQuillin; Marco Picchioni; Diana P Prata; Dan Rujescu; Katja Schulze; Madiha Shaikh; Timothea Toulopoulou; Neeltje van Haren; Jim van Os; Evangelos Vassos; Muriel Walshe; Cathryn Lewis; Robin M Murray; John Powell; Elvira Bramon
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2017-08-29       Impact factor: 3.568

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