Literature DB >> 27786481

Electrostatic versus Resonance Interactions in Photoreceptor Proteins: The Case of Rhodopsin.

Riccardo Guareschi1, Omar Valsson2, Carles Curutchet3, Benedetta Mennucci4, Claudia Filippi1.   

Abstract

Light sensing in photoreceptor proteins is subtly modulated by the multiple interactions between the chromophoric unit and its binding pocket. Many theoretical and experimental studies have tried to uncover the fundamental origin of these interactions but reached contradictory conclusions as to whether electrostatics, polarization, or intrinsically quantum effects prevail. Here, we select rhodopsin as a prototypical photoreceptor system to reveal the molecular mechanism underlying these interactions and regulating the spectral tuning. Combining a multireference perturbation method and density functional theory with a classical but atomistic and polarizable embedding scheme, we show that accounting for electrostatics only leads to a qualitatively wrong picture, while a responsive environment can successfully capture both the classical and quantum dominant effects. Several residues are found to tune the excitation by both differentially stabilizing ground and excited states and through nonclassical "inductive resonance" interactions. The results obtained with such a quantum-in-classical model are validated against both experimental data and fully quantum calculations.

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Year:  2016        PMID: 27786481     DOI: 10.1021/acs.jpclett.6b02043

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  4 in total

1.  The role of charge-transfer states in the spectral tuning of antenna complexes of purple bacteria.

Authors:  Michele Nottoli; Sandro Jurinovich; Lorenzo Cupellini; Alastair T Gardiner; Richard Cogdell; Benedetta Mennucci
Journal:  Photosynth Res       Date:  2018-03-03       Impact factor: 3.573

Review 2.  Frontiers in Multiscale Modeling of Photoreceptor Proteins.

Authors:  Maria-Andrea Mroginski; Suliman Adam; Gil S Amoyal; Avishai Barnoy; Ana-Nicoleta Bondar; Veniamin A Borin; Jonathan R Church; Tatiana Domratcheva; Bernd Ensing; Francesca Fanelli; Nicolas Ferré; Ofer Filiba; Laura Pedraza-González; Ronald González; Cristina E González-Espinoza; Rajiv K Kar; Lukas Kemmler; Seung Soo Kim; Jacob Kongsted; Anna I Krylov; Yigal Lahav; Michalis Lazaratos; Qays NasserEddin; Isabelle Navizet; Alexander Nemukhin; Massimo Olivucci; Jógvan Magnus Haugaard Olsen; Alberto Pérez de Alba Ortíz; Elisa Pieri; Aditya G Rao; Young Min Rhee; Niccolò Ricardi; Saumik Sen; Ilia A Solov'yov; Luca De Vico; Tomasz A Wesolowski; Christian Wiebeler; Xuchun Yang; Igor Schapiro
Journal:  Photochem Photobiol       Date:  2021-02-13       Impact factor: 3.521

3.  Trajectory Surface Hopping for a Polarizable Embedding QM/MM Formulation.

Authors:  Mattia Bondanza; Baptiste Demoulin; Filippo Lipparini; Mario Barbatti; Benedetta Mennucci
Journal:  J Phys Chem A       Date:  2022-09-15       Impact factor: 2.944

4.  The Bethe-Salpeter formalism with polarisable continuum embedding: reconciling linear-response and state-specific features.

Authors:  Ivan Duchemin; Ciro A Guido; Denis Jacquemin; Xavier Blase
Journal:  Chem Sci       Date:  2018-04-05       Impact factor: 9.825

  4 in total

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