Literature DB >> 27783950

Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells.

Aster H Juan1, Stan Wang2, Kyung Dae Ko3, Hossein Zare3, Pei-Fang Tsai3, Xuesong Feng3, Karinna O Vivanco4, Anthony M Ascoli3, Gustavo Gutierrez-Cruz3, Jordan Krebs5, Simone Sidoli6, Adam L Knight7, Roger A Pedersen8, Benjamin A Garcia6, Rafael Casellas5, Jizhong Zou9, Vittorio Sartorelli10.   

Abstract

The polycomb repressive complex 2 (PRC2) methylates lysine 27 of histone H3 (H3K27) through its catalytic subunit Ezh2. PRC2-mediated di- and tri-methylation (H3K27me2/H3K27me3) have been interchangeably associated with gene repression. However, it remains unclear whether these two degrees of H3K27 methylation have different functions. In this study, we have generated isogenic mouse embryonic stem cells (ESCs) with a modified H3K27me2/H3K27me3 ratio. Our findings document dynamic developmental control in the genomic distribution of H3K27me2 and H3K27me3 at regulatory regions in ESCs. They also reveal that modifying the ratio of H3K27me2 and H3K27me3 is sufficient for the acquisition and repression of defined cell lineage transcriptional programs and phenotypes and influences induction of the ESC ground state. Published by Elsevier Inc.

Entities:  

Keywords:  H3K27 methylation; embryonic stem cells; polycomb proteins

Mesh:

Substances:

Year:  2016        PMID: 27783950      PMCID: PMC5123747          DOI: 10.1016/j.celrep.2016.09.087

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  66 in total

1.  Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells.

Authors:  Ehsan Habibi; Arie B Brinkman; Julia Arand; Leonie I Kroeze; Hindrik H D Kerstens; Filomena Matarese; Konstantin Lepikhov; Marta Gut; Isabelle Brun-Heath; Nina C Hubner; Rosaria Benedetti; Lucia Altucci; Joop H Jansen; Jörn Walter; Ivo G Gut; Hendrik Marks; Hendrik G Stunnenberg
Journal:  Cell Stem Cell       Date:  2013-07-11       Impact factor: 24.633

2.  Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity.

Authors:  Karin J Ferrari; Andrea Scelfo; Sriganesh Jammula; Alessandro Cuomo; Iros Barozzi; Alexandra Stützer; Wolfgang Fischle; Tiziana Bonaldi; Diego Pasini
Journal:  Mol Cell       Date:  2013-11-27       Impact factor: 17.970

3.  Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Authors:  Nathaniel D Heintzman; Rhona K Stuart; Gary Hon; Yutao Fu; Christina W Ching; R David Hawkins; Leah O Barrera; Sara Van Calcar; Chunxu Qu; Keith A Ching; Wei Wang; Zhiping Weng; Roland D Green; Gregory E Crawford; Bing Ren
Journal:  Nat Genet       Date:  2007-02-04       Impact factor: 38.330

4.  Quantitative ChIP-Seq normalization reveals global modulation of the epigenome.

Authors:  David A Orlando; Mei Wei Chen; Victoria E Brown; Snehakumari Solanki; Yoon J Choi; Eric R Olson; Christian C Fritz; James E Bradner; Matthew G Guenther
Journal:  Cell Rep       Date:  2014-10-30       Impact factor: 9.423

5.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

6.  Polycomb complexes act redundantly to repress genomic repeats and genes.

Authors:  Martin Leeb; Diego Pasini; Maria Novatchkova; Markus Jaritz; Kristian Helin; Anton Wutz
Journal:  Genes Dev       Date:  2010-02-01       Impact factor: 11.361

7.  Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3.

Authors:  Andrei Kuzmichev; Thomas Jenuwein; Paul Tempst; Danny Reinberg
Journal:  Mol Cell       Date:  2004-04-23       Impact factor: 17.970

8.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

9.  Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation.

Authors:  Kairong Cui; Chongzhi Zang; Tae-Young Roh; Dustin E Schones; Richard W Childs; Weiqun Peng; Keji Zhao
Journal:  Cell Stem Cell       Date:  2009-01-09       Impact factor: 24.633

10.  Comparative expression of the mouse Sox1, Sox2 and Sox3 genes from pre-gastrulation to early somite stages.

Authors:  H B Wood; V Episkopou
Journal:  Mech Dev       Date:  1999-08       Impact factor: 1.882

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  23 in total

Review 1.  Towards understanding of PRC2 binding to RNA.

Authors:  Junli Yan; Bibek Dutta; Yan Ting Hee; Wee-Joo Chng
Journal:  RNA Biol       Date:  2019-01-08       Impact factor: 4.652

Review 2.  Epigenetic control of transcriptional regulation in pluripotency and early differentiation.

Authors:  Deniz Gökbuget; Robert Blelloch
Journal:  Development       Date:  2019-09-25       Impact factor: 6.868

3.  Embryonic Stem Cell-Derived Extracellular Vesicles Maintain ESC Stemness by Activating FAK.

Authors:  Yun Ha Hur; Shi Feng; Kristin F Wilson; Richard A Cerione; Marc A Antonyak
Journal:  Dev Cell       Date:  2020-12-14       Impact factor: 12.270

4.  The Elongation Factor Spt6 Maintains ESC Pluripotency by Controlling Super-Enhancers and Counteracting Polycomb Proteins.

Authors:  A Hongjun Wang; Aster H Juan; Kyung Dae Ko; Pei-Fang Tsai; Hossein Zare; Stefania Dell'Orso; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2017-10-12       Impact factor: 17.970

5.  The H3K27M mutation alters stem cell growth, epigenetic regulation, and differentiation potential.

Authors:  N Kfoury-Beaumont; R Prakasam; J B Rubin; K L Kroll; S Pondugula; J S Lagas; S Matkovich; P Gontarz; L Yang; H Yano; A H Kim
Journal:  BMC Biol       Date:  2022-05-30       Impact factor: 7.364

6.  Exosomes from Suxiao Jiuxin pill-treated cardiac mesenchymal stem cells decrease H3K27 demethylase UTX expression in mouse cardiomyocytes in vitro.

Authors:  Xiao-Fen Ruan; Yong-Jun Li; Cheng-Wei Ju; Yan Shen; Wei Lei; Can Chen; Yang Li; Hong Yu; Yu-Tao Liu; Il-Man Kim; Xiao-Long Wang; Neal L Weintraub; Yaoliang Tang
Journal:  Acta Pharmacol Sin       Date:  2018-03-15       Impact factor: 6.150

7.  Retinoid X Receptor Activation Alters the Chromatin Landscape To Commit Mesenchymal Stem Cells to the Adipose Lineage.

Authors:  Bassem M Shoucri; Eric S Martinez; Timothy J Abreo; Victor T Hung; Zdena Moosova; Toshi Shioda; Bruce Blumberg
Journal:  Endocrinology       Date:  2017-10-01       Impact factor: 4.736

8.  Full methylation of H3K27 by PRC2 is dispensable for initial embryoid body formation but required to maintain differentiated cell identity.

Authors:  Sara A Miller; Manashree Damle; Jongmin Kim; Robert E Kingston
Journal:  Development       Date:  2021-04-15       Impact factor: 6.868

Review 9.  DNA binding by polycomb-group proteins: searching for the link to CpG islands.

Authors:  Brady M Owen; Chen Davidovich
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

10.  Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cells.

Authors:  Helen M Tauc; Imilce A Rodriguez-Fernandez; Jason A Hackney; Michal Pawlak; Tal Ronnen Oron; Jerome Korzelius; Hagar F Moussa; Subhra Chaudhuri; Zora Modrusan; Bruce A Edgar; Heinrich Jasper
Journal:  Elife       Date:  2021-03-16       Impact factor: 8.140

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