Literature DB >> 27782138

Optical and force nanoscopy in microbiology.

Jie Xiao1, Yves F Dufrêne2,3.   

Abstract

Microbial cells have developed sophisticated multicomponent structures and machineries to govern basic cellular processes, such as chromosome segregation, gene expression, cell division, mechanosensing, cell adhesion and biofilm formation. Because of the small cell sizes, subcellular structures have long been difficult to visualize using diffraction-limited light microscopy. During the last three decades, optical and force nanoscopy techniques have been developed to probe intracellular and extracellular structures with unprecedented resolutions, enabling researchers to study their organization, dynamics and interactions in individual cells, at the single-molecule level, from the inside out, and all the way up to cell-cell interactions in microbial communities. In this Review, we discuss the principles, advantages and limitations of the main optical and force nanoscopy techniques available in microbiology, and we highlight some outstanding questions that these new tools may help to answer.

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Mesh:

Year:  2016        PMID: 27782138      PMCID: PMC5839876          DOI: 10.1038/nmicrobiol.2016.186

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   17.745


  155 in total

1.  Ultrafast, temporally stochastic STED nanoscopy of millisecond dynamics.

Authors:  Jale Schneider; Jasmin Zahn; Marta Maglione; Stephan J Sigrist; Jonas Marquard; Jakub Chojnacki; Hans-Georg Kräusslich; Steffen J Sahl; Johann Engelhardt; Stefan W Hell
Journal:  Nat Methods       Date:  2015-07-27       Impact factor: 28.547

2.  Zinc-dependent mechanical properties of Staphylococcus aureus biofilm-forming surface protein SasG.

Authors:  Cécile Formosa-Dague; Pietro Speziale; Timothy J Foster; Joan A Geoghegan; Yves F Dufrêne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-29       Impact factor: 11.205

3.  Defining the rate-limiting processes of bacterial cytokinesis.

Authors:  Carla Coltharp; Jackson Buss; Trevor M Plumer; Jie Xiao
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

4.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

5.  Single-molecule DNA repair in live bacteria.

Authors:  Stephan Uphoff; Rodrigo Reyes-Lamothe; Federico Garza de Leon; David J Sherratt; Achillefs N Kapanidis
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

6.  UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

Authors:  M Tang; X Shen; E G Frank; M O'Donnell; R Woodgate; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

7.  In vivo structure of the E. coli FtsZ-ring revealed by photoactivated localization microscopy (PALM).

Authors:  Guo Fu; Tao Huang; Jackson Buss; Carla Coltharp; Zach Hensel; Jie Xiao
Journal:  PLoS One       Date:  2010-09-13       Impact factor: 3.240

8.  PopZ identifies the new pole, and PodJ identifies the old pole during polar growth in Agrobacterium tumefaciens.

Authors:  Romain Grangeon; John R Zupan; James Anderson-Furgeson; Patricia C Zambryski
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

9.  Superresolution imaging captures carbohydrate utilization dynamics in human gut symbionts.

Authors:  Krishanthi S Karunatilaka; Elizabeth A Cameron; Eric C Martens; Nicole M Koropatkin; Julie S Biteen
Journal:  MBio       Date:  2014-11-11       Impact factor: 7.867

10.  Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms.

Authors:  Lynne Turnbull; Masanori Toyofuku; Amelia L Hynen; Masaharu Kurosawa; Gabriella Pessi; Nicola K Petty; Sarah R Osvath; Gerardo Cárcamo-Oyarce; Erin S Gloag; Raz Shimoni; Ulrich Omasits; Satoshi Ito; Xinhui Yap; Leigh G Monahan; Rosalia Cavaliere; Christian H Ahrens; Ian G Charles; Nobuhiko Nomura; Leo Eberl; Cynthia B Whitchurch
Journal:  Nat Commun       Date:  2016-04-14       Impact factor: 14.919

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  28 in total

1.  Biofilm formation - what we can learn from recent developments.

Authors:  T Bjarnsholt; K Buhlin; Y F Dufrêne; M Gomelsky; A Moroni; M Ramstedt; K P Rumbaugh; T Schulte; L Sun; B Åkerlund; U Römling
Journal:  J Intern Med       Date:  2018-07-09       Impact factor: 8.989

Review 2.  Amyloid-Like β-Aggregates as Force-Sensitive Switches in Fungal Biofilms and Infections.

Authors:  Peter N Lipke; Stephen A Klotz; Yves F Dufrene; Desmond N Jackson; Melissa C Garcia-Sherman
Journal:  Microbiol Mol Biol Rev       Date:  2017-11-29       Impact factor: 11.056

3.  Molecular interactions and inhibition of the staphylococcal biofilm-forming protein SdrC.

Authors:  Cécile Feuillie; Cécile Formosa-Dague; Leanne M C Hays; Ophélie Vervaeck; Sylvie Derclaye; Marian P Brennan; Timothy J Foster; Joan A Geoghegan; Yves F Dufrêne
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-20       Impact factor: 11.205

4.  In vitro single-cell dissection revealing the interior structure of cable bacteria.

Authors:  Zaixing Jiang; Shuai Zhang; Lasse Hyldgaard Klausen; Jie Song; Qiang Li; Zegao Wang; Bjørn Torger Stokke; Yudong Huang; Flemming Besenbacher; Lars Peter Nielsen; Mingdong Dong
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

Review 5.  How Microbes Use Force To Control Adhesion.

Authors:  Albertus Viljoen; Johann Mignolet; Felipe Viela; Marion Mathelié-Guinlet; Yves F Dufrêne
Journal:  J Bacteriol       Date:  2020-05-27       Impact factor: 3.490

6.  Combining confocal and atomic force microscopy to quantify single-virus binding to mammalian cell surfaces.

Authors:  Richard Newton; Martin Delguste; Melanie Koehler; Andra C Dumitru; Pawel R Laskowski; Daniel J Müller; David Alsteens
Journal:  Nat Protoc       Date:  2017-10-05       Impact factor: 13.491

Review 7.  Mechanomicrobiology: how bacteria sense and respond to forces.

Authors:  Yves F Dufrêne; Alexandre Persat
Journal:  Nat Rev Microbiol       Date:  2020-01-20       Impact factor: 60.633

8.  Clumping Factor B Promotes Adherence of Staphylococcus aureus to Corneocytes in Atopic Dermatitis.

Authors:  Orla M Fleury; Maeve A McAleer; Cécile Feuillie; Cécile Formosa-Dague; Emily Sansevere; Désirée E Bennett; Aisling M Towell; W H Irwin McLean; Sanja Kezic; D Ashley Robinson; Padraic G Fallon; Timothy J Foster; Yves F Dufrêne; Alan D Irvine; Joan A Geoghegan
Journal:  Infect Immun       Date:  2017-05-23       Impact factor: 3.441

Review 9.  A review on anti-adhesion therapies of bacterial diseases.

Authors:  Arezoo Asadi; Shabnam Razavi; Malihe Talebi; Mehrdad Gholami
Journal:  Infection       Date:  2018-10-01       Impact factor: 3.553

10.  Force-Induced Strengthening of the Interaction between Staphylococcus aureus Clumping Factor B and Loricrin.

Authors:  Pauline Vitry; Claire Valotteau; Cécile Feuillie; Simon Bernard; David Alsteens; Joan A Geoghegan; Yves F Dufrêne
Journal:  mBio       Date:  2017-12-05       Impact factor: 7.867

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