Literature DB >> 27771293

Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration.

John D Chan1, Dan Zhang1, Xiaolong Liu1, Magdalena Zarowiecki2, Matthew Berriman2, Jonathan S Marchant3.   

Abstract

The robust regenerative capacity of planarian flatworms depends on the orchestration of signaling events from early wounding responses through the stem cell enacted differentiative outcomes that restore appropriate tissue types. Acute signaling events in excitable cells play an important role in determining regenerative polarity, rationalized by the discovery that sub-epidermal muscle cells express critical patterning genes known to control regenerative outcomes. These data imply a dual conductive (neuromuscular signaling) and instructive (anterior-posterior patterning) role for Ca2+ signaling in planarian regeneration. Here, to facilitate study of acute signaling events in the excitable cell niche, we provide a de novo transcriptome assembly from the planarian Dugesia japonica allowing characterization of the diverse ionotropic portfolio of this model organism. We demonstrate the utility of this resource by proceeding to characterize the individual role of each of the planarian voltage-operated Ca2+ channels during regeneration, and demonstrate that knockdown of a specific voltage operated Ca2+ channel (Cav1B) that impairs muscle function uniquely creates an environment permissive for anteriorization. Provision of the full transcriptomic dataset should facilitate further investigations of molecules within the planarian voltage-gated channel portfolio to explore the role of excitable cell physiology on regenerative outcomes. This article is part of a Special Issue entitled: ECS Meeting edited by Claus Heizmann, Joachim Krebs and Jacques Haiech.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Neuromuscular signaling; Regeneration; Transcriptome; Voltage-operated Ca(2+) channels

Mesh:

Substances:

Year:  2016        PMID: 27771293      PMCID: PMC5397384          DOI: 10.1016/j.bbamcr.2016.10.010

Source DB:  PubMed          Journal:  Biochim Biophys Acta Mol Cell Res        ISSN: 0167-4889            Impact factor:   4.739


  67 in total

Review 1.  Regenerating the central nervous system: how easy for planarians!

Authors:  Francesc Cebrià
Journal:  Dev Genes Evol       Date:  2007-11-13       Impact factor: 0.900

2.  Planarian Hedgehog/Patched establishes anterior-posterior polarity by regulating Wnt signaling.

Authors:  Shigenobu Yazawa; Yoshihiko Umesono; Tetsutaro Hayashi; Hiroshi Tarui; Kiyokazu Agata
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-11       Impact factor: 11.205

3.  Opposing roles of voltage-gated Ca2+ channels in neuronal control of regenerative patterning.

Authors:  Dan Zhang; John D Chan; Taisaku Nogi; Jonathan S Marchant
Journal:  J Neurosci       Date:  2011-11-02       Impact factor: 6.167

4.  Early planarian brain regeneration is independent of blastema polarity mediated by the Wnt/β-catenin pathway.

Authors:  Marta Iglesias; Maria Almuedo-Castillo; A Aziz Aboobaker; Emili Saló
Journal:  Dev Biol       Date:  2011-07-20       Impact factor: 3.582

Review 5.  The neuronal genome of Caenorhabditis elegans.

Authors:  Oliver Hobert
Journal:  WormBook       Date:  2013-08-13

6.  Restoration of anterior regeneration in a planarian with limited regenerative ability.

Authors:  James M Sikes; Phillip A Newmark
Journal:  Nature       Date:  2013-07-24       Impact factor: 49.962

7.  Muscle cells provide instructions for planarian regeneration.

Authors:  Jessica N Witchley; Mirjam Mayer; Daniel E Wagner; Jared H Owen; Peter W Reddien
Journal:  Cell Rep       Date:  2013-08-15       Impact factor: 9.423

8.  SmedGD: the Schmidtea mediterranea genome database.

Authors:  Sofia M C Robb; Eric Ross; Alejandro Sánchez Alvarado
Journal:  Nucleic Acids Res       Date:  2007-09-18       Impact factor: 16.971

9.  'Death and axes': unexpected Ca²⁺ entry phenologs predict new anti-schistosomal agents.

Authors:  John D Chan; Prince N Agbedanu; Mostafa Zamanian; Sarah M Gruba; Christy L Haynes; Timothy A Day; Jonathan S Marchant
Journal:  PLoS Pathog       Date:  2014-02-20       Impact factor: 6.823

10.  Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica.

Authors:  Osamu Nishimura; Kazutaka Hosoda; Eri Kawaguchi; Shigenobu Yazawa; Tetsutaro Hayashi; Takeshi Inoue; Yoshihiko Umesono; Kiyokazu Agata
Journal:  PLoS One       Date:  2015-11-20       Impact factor: 3.240

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  9 in total

Review 1.  Planarian regeneration as a model of anatomical homeostasis: Recent progress in biophysical and computational approaches.

Authors:  Michael Levin; Alexis M Pietak; Johanna Bischof
Journal:  Semin Cell Dev Biol       Date:  2018-05-01       Impact factor: 7.727

2.  Restoration of DNA integrity and the cell cycle by electric stimulation in planarian tissues damaged by ionizing radiation.

Authors:  Devon Davidian; Melanie LeGro; Paul G Barghouth; Salvador Rojas; Benjamin Ziman; Eli Isael Maciel; David Ardell; Ariel L Escobar; Néstor J Oviedo
Journal:  J Cell Sci       Date:  2022-05-13       Impact factor: 5.235

3.  Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily.

Authors:  John D Chan; Dan Zhang; Xiaolong Liu; Magdalena Z Zarowiecki; Matthew Berriman; Jonathan S Marchant
Journal:  Data Brief       Date:  2016-11-16

4.  Live imaging of intracellular pH in planarians using the ratiometric fluorescent dye SNARF-5F-AM.

Authors:  Wendy Scott Beane; Dany Spencer Adams; Junji Morokuma; Michael Levin
Journal:  Biol Methods Protoc       Date:  2019-05-29

5.  Pharmacological or genetic targeting of Transient Receptor Potential (TRP) channels can disrupt the planarian escape response.

Authors:  Ziad Sabry; Alicia Ho; Danielle Ireland; Christina Rabeler; Olivier Cochet-Escartin; Eva-Maria S Collins
Journal:  PLoS One       Date:  2019-12-05       Impact factor: 3.240

Review 6.  An insight into planarian regeneration.

Authors:  Xin-Yang Ge; Xiao Han; Yong-Liang Zhao; Guan-Shen Cui; Yun-Gui Yang
Journal:  Cell Prolif       Date:  2022-07-10       Impact factor: 8.755

7.  The feedback loop between calcineurin, calmodulin-dependent protein kinase II, and nuclear factor of activated T-cells regulates the number of GABAergic neurons during planarian head regeneration.

Authors:  Hui Zhen; Mingyue Zheng; Huazhi Geng; Qian Song; Lili Gao; Zuoqing Yuan; Hongkuan Deng; Qiuxiang Pang; Bosheng Zhao
Journal:  Front Mol Neurosci       Date:  2022-09-12       Impact factor: 6.261

8.  Global feather orientations changed by electric current.

Authors:  Ting-Xin Jiang; Ang Li; Chih-Min Lin; Cathleen Chiu; Jung-Hwa Cho; Brian Reid; Min Zhao; Robert H Chow; Randall Bruce Widelitz; Cheng-Ming Chuong
Journal:  iScience       Date:  2021-05-31

9.  Conserved biophysical features of the CaV2 presynaptic Ca2+ channel homologue from the early-diverging animal Trichoplax adhaerens.

Authors:  Julia Gauberg; Salsabil Abdallah; Wassim Elkhatib; Alicia N Harracksingh; Thomas Piekut; Elise F Stanley; Adriano Senatore
Journal:  J Biol Chem       Date:  2020-10-23       Impact factor: 5.157

  9 in total

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