Literature DB >> 29635019

Planarian regeneration as a model of anatomical homeostasis: Recent progress in biophysical and computational approaches.

Michael Levin1, Alexis M Pietak2, Johanna Bischof3.   

Abstract

Planarian behavior, physiology, and pattern control offer profound lessons for regenerative medicine, evolutionary biology, morphogenetic engineering, robotics, and unconventional computation. Despite recent advances in the molecular genetics of stem cell differentiation, this model organism's remarkable anatomical homeostasis provokes us with truly fundamental puzzles about the origin of large-scale shape and its relationship to the genome. In this review article, we first highlight several deep mysteries about planarian regeneration in the context of the current paradigm in this field. We then review recent progress in understanding of the physiological control of an endogenous, bioelectric pattern memory that guides regeneration, and how modulating this memory can permanently alter the flatworm's target morphology. Finally, we focus on computational approaches that complement reductive pathway analysis with synthetic, systems-level understanding of morphological decision-making. We analyze existing models of planarian pattern control and highlight recent successes and remaining knowledge gaps in this interdisciplinary frontier field.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Dugesia japonica; Morphostasis; Patterning; Planaria; Regeneration

Mesh:

Year:  2018        PMID: 29635019      PMCID: PMC6234102          DOI: 10.1016/j.semcdb.2018.04.003

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  260 in total

1.  Heterotypic gap junction channels as voltage-sensitive valves for intercellular signaling.

Authors:  Nicolas Palacios-Prado; Feliksas F Bukauskas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-24       Impact factor: 11.205

2.  Action and behavior: a free-energy formulation.

Authors:  Karl J Friston; Jean Daunizeau; James Kilner; Stefan J Kiebel
Journal:  Biol Cybern       Date:  2010-02-11       Impact factor: 2.086

3.  Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration.

Authors:  Daniel Lobo; Junji Morokuma; Michael Levin
Journal:  Bioinformatics       Date:  2016-05-10       Impact factor: 6.937

Review 4.  Gap junctional signaling in pattern regulation: Physiological network connectivity instructs growth and form.

Authors:  Juanita Mathews; Michael Levin
Journal:  Dev Neurobiol       Date:  2016-06-24       Impact factor: 3.964

5.  Stimulation of DNA synthesis in CNS neurones by sustained depolarisation.

Authors:  E F Stillwell; C M Cone; C D Cone
Journal:  Nat New Biol       Date:  1973-11-28

6.  Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis.

Authors:  Vaibhav P Pai; Sherry Aw; Tal Shomrat; Joan M Lemire; Michael Levin
Journal:  Development       Date:  2011-12-07       Impact factor: 6.868

7.  Activating mutations in the gene encoding the ATP-sensitive potassium-channel subunit Kir6.2 and permanent neonatal diabetes.

Authors:  Anna L Gloyn; Ewan R Pearson; Jennifer F Antcliff; Peter Proks; G Jan Bruining; Annabelle S Slingerland; Neville Howard; Shubha Srinivasan; José M C L Silva; Janne Molnes; Emma L Edghill; Timothy M Frayling; I Karen Temple; Deborah Mackay; Julian P H Shield; Zdenek Sumnik; Adrian van Rhijn; Jerry K H Wales; Penelope Clark; Shaun Gorman; Javier Aisenberg; Sian Ellard; Pål R Njølstad; Frances M Ashcroft; Andrew T Hattersley
Journal:  N Engl J Med       Date:  2004-04-29       Impact factor: 91.245

Review 8.  Go ahead, grow a head! A planarian's guide to anterior regeneration.

Authors:  Suthira Owlarn; Kerstin Bartscherer
Journal:  Regeneration (Oxf)       Date:  2016-06-24

9.  A Miniaturized Screen of a Schistosoma mansoni Serotonergic G Protein-Coupled Receptor Identifies Novel Classes of Parasite-Selective Inhibitors.

Authors:  John D Chan; John D McCorvy; Sreemoyee Acharya; Malcolm E Johns; Timothy A Day; Bryan L Roth; Jonathan S Marchant
Journal:  PLoS Pathog       Date:  2016-05-17       Impact factor: 6.823

10.  Wnt, Ptk7, and FGFRL expression gradients control trunk positional identity in planarian regeneration.

Authors:  Rachel Lander; Christian P Petersen
Journal:  Elife       Date:  2016-04-13       Impact factor: 8.140

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  9 in total

1.  On the coupling of mechanics with bioelectricity and its role in morphogenesis.

Authors:  A Leronni; L Bardella; L Dorfmann; A Pietak; M Levin
Journal:  J R Soc Interface       Date:  2020-06-03       Impact factor: 4.118

Review 2.  Insights into regeneration tool box: An animal model approach.

Authors:  Abijeet S Mehta; Amit Singh
Journal:  Dev Biol       Date:  2019-04-13       Impact factor: 3.582

Review 3.  Bistability of somatic pattern memories: stochastic outcomes in bioelectric circuits underlying regeneration.

Authors:  Giovanni Pezzulo; Joshua LaPalme; Fallon Durant; Michael Levin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-02-08       Impact factor: 6.237

Review 4.  Towards High-Throughput Chemobehavioural Phenomics in Neuropsychiatric Drug Discovery.

Authors:  Jason Henry; Donald Wlodkowic
Journal:  Mar Drugs       Date:  2019-06-06       Impact factor: 5.118

5.  Modeling somatic computation with non-neural bioelectric networks.

Authors:  Santosh Manicka; Michael Levin
Journal:  Sci Rep       Date:  2019-12-09       Impact factor: 4.379

6.  The Computational Boundary of a "Self": Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition.

Authors:  Michael Levin
Journal:  Front Psychol       Date:  2019-12-13

7.  Comparative Proteome Analysis Indicates The Divergence between The Head and Tail Regeneration in Planarian.

Authors:  Xiaoguang Chen; Yumei Liu; Xuemin Zhu; Qiongxia Lv
Journal:  Cell J       Date:  2021-11-23       Impact factor: 2.479

Review 8.  Endogenous Bioelectrics in Development, Cancer, and Regeneration: Drugs and Bioelectronic Devices as Electroceuticals for Regenerative Medicine.

Authors:  Michael Levin; John Selberg; Marco Rolandi
Journal:  iScience       Date:  2019-11-25

Review 9.  Articulating the "stem cell niche" paradigm through the lens of non-model aquatic invertebrates.

Authors:  P Martinez; L Ballarin; A V Ereskovsky; E Gazave; B Hobmayer; L Manni; E Rottinger; S G Sprecher; S Tiozzo; A Varela-Coelho; B Rinkevich
Journal:  BMC Biol       Date:  2022-01-20       Impact factor: 7.431

  9 in total

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