Literature DB >> 27769989

Statistical Methods for Unusual Count Data: Examples From Studies of Microchimerism.

Katherine A Guthrie, Hilary S Gammill, Mads Kamper-Jørgensen, Anne Tjønneland, Vijayakrishna K Gadi, J Lee Nelson, Wendy Leisenring.   

Abstract

Natural acquisition of small amounts of foreign cells or DNA, referred to as microchimerism, occurs primarily through maternal-fetal exchange during pregnancy. Microchimerism can persist long-term and has been associated with both beneficial and adverse human health outcomes. Quantitative microchimerism data present challenges for statistical analysis, including a skewed distribution, excess zero values, and occasional large values. Methods for comparing microchimerism levels across groups while controlling for covariates are not well established. We compared statistical models for quantitative microchimerism values, applied to simulated data sets and 2 observed data sets, to make recommendations for analytic practice. Modeling the level of quantitative microchimerism as a rate via Poisson or negative binomial model with the rate of detection defined as a count of microchimerism genome equivalents per total cell equivalents tested utilizes all available data and facilitates a comparison of rates between groups. We found that both the marginalized zero-inflated Poisson model and the negative binomial model can provide unbiased and consistent estimates of the overall association of exposure or study group with microchimerism detection rates. The negative binomial model remains the more accessible of these 2 approaches; thus, we conclude that the negative binomial model may be most appropriate for analyzing quantitative microchimerism data.

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Year:  2016        PMID: 27769989      PMCID: PMC5141948          DOI: 10.1093/aje/kww093

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  21 in total

1.  Effect of parity on fetal and maternal microchimerism: interaction of grafts within a host?

Authors:  Hilary S Gammill; Katherine A Guthrie; Tessa M Aydelotte; Kristina M Adams Waldorf; J Lee Nelson
Journal:  Blood       Date:  2010-07-13       Impact factor: 22.113

2.  Maternal microchimerism in healthy adults in lymphocytes, monocyte/macrophages and NK cells.

Authors:  Laurence S Loubière; Nathalie C Lambert; Laura J Flinn; Timothy D Erickson; Zhen Yan; Katherine A Guthrie; Kathy T Vickers; J Lee Nelson
Journal:  Lab Invest       Date:  2006-09-11       Impact factor: 5.662

3.  Microchimerism of presumed fetal origin in thyroid specimens from women: a case-control study.

Authors:  B Srivatsa; S Srivatsa; K L Johnson; O Samura; S L Lee; D W Bianchi
Journal:  Lancet       Date:  2001-12-15       Impact factor: 79.321

4.  Microchimerism of maternal origin persists into adult life.

Authors:  S Maloney; A Smith; D E Furst; D Myerson; K Rupert; P C Evans; J L Nelson
Journal:  J Clin Invest       Date:  1999-07       Impact factor: 14.808

5.  Opposite effects of microchimerism on breast and colon cancer.

Authors:  Mads Kamper-Jørgensen; Robert J Biggar; Anne Tjønneland; Henrik Hjalgrim; Niels Kroman; Klaus Rostgaard; Casey L Stamper; Anja Olsen; Anne-Marie N Andersen; Vijayakrishna K Gadi
Journal:  Eur J Cancer       Date:  2012-03-05       Impact factor: 9.162

6.  Microchimeric fetal cells play a role in maternal wound healing after pregnancy.

Authors:  Uzma Mahmood; Keelin O'Donoghue
Journal:  Chimerism       Date:  2014

7.  Analysis of overdispersed count data: application to the Human Papillomavirus Infection in Men (HIM) Study.

Authors:  J-H Lee; G Han; W J Fulp; A R Giuliano
Journal:  Epidemiol Infect       Date:  2011-08-30       Impact factor: 2.451

8.  Male fetal progenitor cells persist in maternal blood for as long as 27 years postpartum.

Authors:  D W Bianchi; G K Zickwolf; G J Weil; S Sylvester; M A DeMaria
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-23       Impact factor: 11.205

9.  Transfer of the shared epitope through microchimerism in women with rheumatoid arthritis.

Authors:  J M Rak; L Maestroni; N Balandraud; S Guis; H Boudinet; M C Guzian; Z Yan; D Azzouz; I Auger; C Roudier; M Martin; R Didelot; J Roudier; N C Lambert
Journal:  Arthritis Rheum       Date:  2009-01

10.  Fetal microchimeric cells in blood of women with an autoimmune thyroid disease.

Authors:  Trees Lepez; Mado Vandewoestyne; Shahid Hussain; Filip Van Nieuwerburgh; Kris Poppe; Brigitte Velkeniers; Jean-Marc Kaufman; Dieter Deforce
Journal:  PLoS One       Date:  2011-12-27       Impact factor: 3.240

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  7 in total

1.  Maternal microchimerism is prevalent in cord blood in memory T cells and other cell subsets, and persists post-transplant.

Authors:  Sami B Kanaan; Hilary S Gammill; Whitney E Harrington; Stephen C De Rosa; Philip A Stevenson; Alexandra M Forsyth; Judy Allen; Emma Cousin; Koen van Besien; Colleen S Delaney; J Lee Nelson
Journal:  Oncoimmunology       Date:  2017-03-31       Impact factor: 8.110

2.  Maternal Microchimerism Predicts Increased Infection but Decreased Disease due to Plasmodium falciparum During Early Childhood.

Authors:  Whitney E Harrington; Sami B Kanaan; Atis Muehlenbachs; Robert Morrison; Philip Stevenson; Michal Fried; Patrick E Duffy; J Lee Nelson
Journal:  J Infect Dis       Date:  2017-05-01       Impact factor: 5.226

3.  Umbilical Cord Maternal Microchimerism in Normal and Preeclampsia Pregnancies.

Authors:  Raj Shree; Stephen McCartney; Emma Cousin; Angel Chae; Hilary S Gammill; J L Nelson; Sami B Kanaan
Journal:  Reprod Sci       Date:  2022-09-27       Impact factor: 2.924

4.  Peripheral Plasmodium falciparum Infection in Early Pregnancy Is Associated With Increased Maternal Microchimerism in the Offspring.

Authors:  Neta Simon; Jaclyn Shallat; John Houck; Prasanna Jagannathan; Mary Prahl; Mary K Muhindo; Abel Kakuru; Peter Olwoch; Margaret E Feeney; Whitney E Harrington
Journal:  J Infect Dis       Date:  2021-12-15       Impact factor: 5.226

5.  countfitteR: efficient selection of count distributions to assess DNA damage.

Authors:  Jarosław Chilimoniuk; Alicja Gosiewska; Jadwiga Słowik; Romano Weiss; P Markus Deckert; Stefan Rödiger; Michał Burdukiewicz
Journal:  Ann Transl Med       Date:  2021-04

6.  Factors influencing maternal microchimerism throughout infancy and its impact on infant T cell immunity.

Authors:  Christina Balle; Blair Armistead; Agano Kiravu; Xiaochang Song; Anna-Ursula Happel; Angela A Hoffmann; Sami B Kanaan; J Lee Nelson; Clive M Gray; Heather B Jaspan; Whitney E Harrington
Journal:  J Clin Invest       Date:  2022-07-01       Impact factor: 19.456

7.  Fetal microchimerism by mode of delivery: a prospective cohort study.

Authors:  R Shree; W E Harrington; S B Kanaan; A Forsyth; E Cousin; A Lopez; J L Nelson; H S Gammill
Journal:  BJOG       Date:  2018-09-24       Impact factor: 6.531

  7 in total

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