Literature DB >> 27768867

RNA Binding: Getting Specific about Specificity.

Adrian R Ferré-D'Amaré1.   

Abstract

Sequence-specific nucleic acid binding proteins do not recognize one sequence out of all possibilities; rather, they bind to many sequences with a range of affinities. In this issue of Cell Chemical Biology, Lin et al. (2016), describe the entire landscape of affinities between different RNA molecules and an RNA-binding protein, thus providing a comprehensive description of the factors affecting specificity. Published by Elsevier Ltd.

Entities:  

Mesh：

Substances：

Year:  2016        PMID： 27768867      PMCID： PMC5187952          DOI： 10.1016/j.chembiol.2016.10.001

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN： 2451-9448            Impact factor:   8.116


  8 in total

1.  Rapid construction of empirical RNA fitness landscapes.

Authors:  Jason N Pitt; Adrian R Ferré-D'Amaré
Journal:  Science       Date:  2010-10-15       Impact factor: 47.728

2.  Information content of binding sites on nucleotide sequences.

Authors:  T D Schneider; G D Stormo; L Gold; A Ehrenfeucht
Journal:  J Mol Biol       Date:  1986-04-05       Impact factor: 5.469

3.  Characterization of translational initiation sites in E. coli.

Authors:  G D Stormo; T D Schneider; L M Gold
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

4.  Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli.

Authors:  G D Stormo; T D Schneider; L Gold; A Ehrenfeucht
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

5.  Analysis of the RNA Binding Specificity Landscape of C5 Protein Reveals Structure and Sequence Preferences that Direct RNase P Specificity.

Authors:  Hsuan-Chun Lin; Jing Zhao; Courtney N Niland; Brandon Tran; Eckhard Jankowsky; Michael E Harris
Journal:  Cell Chem Biol       Date:  2016-09-29       Impact factor: 8.116

6.  Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes.

Authors:  Jason D Buenrostro; Carlos L Araya; Lauren M Chircus; Curtis J Layton; Howard Y Chang; Michael P Snyder; William J Greenleaf
Journal:  Nat Biotechnol       Date:  2014-04-13       Impact factor: 54.908

7.  RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.

Authors:  Zhichao Miao; Ryszard W Adamiak; Marc-Frédérick Blanchet; Michal Boniecki; Janusz M Bujnicki; Shi-Jie Chen; Clarence Cheng; Grzegorz Chojnowski; Fang-Chieh Chou; Pablo Cordero; José Almeida Cruz; Adrian R Ferré-D'Amaré; Rhiju Das; Feng Ding; Nikolay V Dokholyan; Stanislaw Dunin-Horkawicz; Wipapat Kladwang; Andrey Krokhotin; Grzegorz Lach; Marcin Magnus; François Major; Thomas H Mann; Benoît Masquida; Dorota Matelska; Mélanie Meyer; Alla Peselis; Mariusz Popenda; Katarzyna J Purzycka; Alexander Serganov; Juliusz Stasiewicz; Marta Szachniuk; Arpit Tandon; Siqi Tian; Jian Wang; Yi Xiao; Xiaojun Xu; Jinwei Zhang; Peinan Zhao; Tomasz Zok; Eric Westhof
Journal:  RNA       Date:  2015-04-16       Impact factor: 4.942

8.  Hidden specificity in an apparently nonspecific RNA-binding protein.

Authors:  Ulf-Peter Guenther; Lindsay E Yandek; Courtney N Niland; Frank E Campbell; David Anderson; Vernon E Anderson; Michael E Harris; Eckhard Jankowsky
Journal:  Nature       Date:  2013-09-22       Impact factor: 49.962
  8 in total
  1 in total

1.  Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding.

Authors:  Olivier Duss; Galina A Stepanyuk; Joseph D Puglisi; James R Williamson
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.