Literature DB >> 27766874

Resolving the Origins of Crystalline Anharmonicity Using Terahertz Time-Domain Spectroscopy and ab Initio Simulations.

Michael T Ruggiero1, J Axel Zeitler1.   

Abstract

Anharmonicity has been shown to be an important piece of the fundamental framework that dictates numerous observable phenomena. In particular, anharmonicity is the driving force of vibrational relaxation processes, mechanisms that are integral to the proper function of numerous chemical processes. However, elucidating its origins has proven difficult due to experimental and theoretical challenges, specifically related to separating the anharmonic contributions from other unrelated effects. While no one technique is particularly suited for providing a complete picture of anharmonicity, by combining multiple complementary methods such a characterization can be made. In this study the role of individual atomic interactions on the anharmonic properties of crystalline purine, the building block of many DNA and RNA nucleobases, is studied by experimental terahertz time-domain spectroscopy and first-principles density functional theory (DFT) and ab initio molecular dynamics simulations (AIMD). In particular, the detailed vibrational information provided by the DFT calculations is used to interpret the atomic origins of anharmonic-related effects as determined by the AIMD calculations, which are in good agreement with the experimental data. The results highlight that anharmonicity is especially pronounced in the intermolecular interactions, particularly along the amine hydrogen bond coordinate, and yields valuable insight into what is similarly observed complex biosystems and crystalline solids.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27766874     DOI: 10.1021/acs.jpcb.6b10248

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  In Situ Observation of the Structure of Crystallizing Magnesium Sulfate Heptahydrate Solutions with Terahertz Transmission Spectroscopy.

Authors:  Qi Li; Johanna Kölbel; Margaret P Davis; Timothy M Korter; Andrew D Bond; Terrence Threlfall; J Axel Zeitler
Journal:  Cryst Growth Des       Date:  2022-05-20       Impact factor: 4.010

2.  Molecular Dynamics Simulations of Macromolecular Crystals.

Authors:  David S Cerutti; David A Case
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-11-16

3.  A study of plant growth regulators detection based on terahertz time-domain spectroscopy and density functional theory.

Authors:  Xiaoxue Du; Yafei Wang; Xiaodong Zhang; Guoxin Ma; Yong Liu; Bin Wang; Hanping Mao
Journal:  RSC Adv       Date:  2021-08-27       Impact factor: 4.036

4.  Low-Frequency Vibrational Spectroscopy and Quantum Mechanical Simulations of the Crystalline Polymorphs of the Antiviral Drug Ribavirin.

Authors:  Margaret P Davis; Timothy M Korter
Journal:  Mol Pharm       Date:  2022-08-11       Impact factor: 5.364

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.