Literature DB >> 27764667

NR1H3 p.Arg415Gln Is Not Associated to Multiple Sclerosis Risk.

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Abstract

A recent study by Wang et al. (2016a) claims that the low-frequency variant NR1H3 p.Arg415Gln is sufficient to cause multiple sclerosis in certain individuals and determines a patient's likelihood of primary progressive disease. We sought to replicate this finding in the International MS Genetics Consortium (IMSGC) patient collection, which is 13-fold larger than the collection of Wang et al. (2016a), but we find no evidence that this variant is associated with either MS or disease subtype. Wang et al. (2016a) also report a common variant association in the region, which we show captures the association the IMSGC reported in 2013. Therefore, we conclude that the reported low-frequency association is a false positive, likely generated by insufficient sample size. The claim of NR1H3 mutations describing a Mendelian form of MS-of which no examples exist-can therefore not be substantiated by data. This Matters Arising paper is in response to Wang et al. (2016a), published in Neuron. See also the related Matters Arising paper by Minikel and MacArthur (2016) and the response by Wang et al. (2016b), published in this issue.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27764667      PMCID: PMC5641967          DOI: 10.1016/j.neuron.2016.09.052

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  16 in total

1.  No evidence for a role of rare CYP27B1 functional variations in multiple sclerosis.

Authors:  Nadia Barizzone; Ine Pauwels; Bernadetta Luciano; Dean Franckaert; Franca Rosa Guerini; Leentje Cosemans; Kelly Hilven; Alessandro Salviati; James Dooley; Dina Danso-Abeam; Alessia di Sapio; Paola Cavalla; Brigitte Decallonne; Chantal Mathieu; Adrian Liston; Maurizio Leone; Bénédicte Dubois; Sandra D'Alfonso; An Goris
Journal:  Ann Neurol       Date:  2013-03-11       Impact factor: 10.422

2.  Rare variants in the CYP27B1 gene are associated with multiple sclerosis.

Authors:  Sreeram V Ramagopalan; David A Dyment; M Zameel Cader; Katie M Morrison; Giulio Disanto; Julia M Morahan; Antonio J Berlanga-Taylor; Adam Handel; Gabriele C De Luca; A Dessa Sadovnick; Pierre Lepage; Alexandre Montpetit; George C Ebers
Journal:  Ann Neurol       Date:  2011-12       Impact factor: 10.422

3.  Case-Control Studies Are Not Familial Studies.

Authors:  Zhe Wang; A Dessa Sadovnick; Anthony L Traboulsee; Jay P Ross; Cecily Q Bernales; Mary Encarnacion; Irene M Yee; Madonna de Lemos; Talitha Greenwood; Joshua D Lee; Galen Wright; Colin J Ross; Si Zhang; Weihong Song; Carles Vilariño-Güell
Journal:  Neuron       Date:  2016-10-19       Impact factor: 17.173

4.  Publicly Available Data Provide Evidence against NR1H3 R415Q Causing Multiple Sclerosis.

Authors:  Eric Vallabh Minikel; Daniel G MacArthur
Journal:  Neuron       Date:  2016-10-19       Impact factor: 17.173

Review 5.  Genetic mapping in human disease.

Authors:  David Altshuler; Mark J Daly; Eric S Lander
Journal:  Science       Date:  2008-11-07       Impact factor: 47.728

6.  No evidence of association between mutant alleles of the CYP27B1 gene and multiple sclerosis.

Authors:  Maria Ban; Stacy Caillier; Inger-Lise Mero; Kjell-Morten Myhr; Elisabeth G Celius; Jan Aarseth; Øivind Torkildsen; Hanne F Harbo; Jorge Oksenberg; Stephen L Hauser; Stephen Sawcer; Alastair Compston
Journal:  Ann Neurol       Date:  2013-02-26       Impact factor: 10.422

7.  A genome-wide scan in forty large pedigrees with multiple sclerosis.

Authors:  Cristen J Willer; David A Dyment; Stacey Cherny; Sreeram V Ramagopalan; Blanca M Herrera; Katie M E Morrison; A Dessa Sadovnick; Neil J Risch; George C Ebers
Journal:  J Hum Genet       Date:  2007-11-15       Impact factor: 3.172

8.  Rare and functional SIAE variants are not associated with autoimmune disease risk in up to 66,924 individuals of European ancestry.

Authors:  Karen A Hunt; Deborah J Smyth; Tobias Balschun; Maria Ban; Vanisha Mistry; Tariq Ahmad; Vidya Anand; Jeffrey C Barrett; Leena Bhaw-Rosun; Nicholas A Bockett; Oliver J Brand; Elisabeth Brouwer; Patrick Concannon; Jason D Cooper; Kerith-Rae M Dias; Cleo C van Diemen; Patrick C Dubois; Sarah Edkins; Regina Fölster-Holst; Karin Fransen; David N Glass; Graham A R Heap; Sylvia Hofmann; Tom W J Huizinga; Sarah Hunt; Cordelia Langford; James Lee; John Mansfield; Maria Giovanna Marrosu; Christopher G Mathew; Charles A Mein; Joachim Müller-Quernheim; Sarah Nutland; Suna Onengut-Gumuscu; Willem Ouwehand; Kerra Pearce; Natalie J Prescott; Marcel D Posthumus; Simon Potter; Giulio Rosati; Jennifer Sambrook; Jack Satsangi; Stefan Schreiber; Corina Shtir; Matthew J Simmonds; Marc Sudman; Susan D Thompson; Rene Toes; Gosia Trynka; Timothy J Vyse; Neil M Walker; Stephan Weidinger; Alexandra Zhernakova; Magdalena Zoledziewska; Rinse K Weersma; Stephen C L Gough; Stephen Sawcer; Cisca Wijmenga; Miles Parkes; Francesco Cucca; Andre Franke; Panos Deloukas; Stephen S Rich; John A Todd; David A van Heel
Journal:  Nat Genet       Date:  2011-12-27       Impact factor: 38.330

9.  Guidelines for investigating causality of sequence variants in human disease.

Authors:  D G MacArthur; T A Manolio; D P Dimmock; H L Rehm; J Shendure; G R Abecasis; D R Adams; R B Altman; S E Antonarakis; E A Ashley; J C Barrett; L G Biesecker; D F Conrad; G M Cooper; N J Cox; M J Daly; M B Gerstein; D B Goldstein; J N Hirschhorn; S M Leal; L A Pennacchio; J A Stamatoyannopoulos; S R Sunyaev; D Valle; B F Voight; W Winckler; C Gunter
Journal:  Nature       Date:  2014-04-24       Impact factor: 49.962

10.  Analysis of protein-coding genetic variation in 60,706 humans.

Authors:  Monkol Lek; Konrad J Karczewski; Eric V Minikel; Kaitlin E Samocha; Eric Banks; Timothy Fennell; Anne H O'Donnell-Luria; James S Ware; Andrew J Hill; Beryl B Cummings; Taru Tukiainen; Daniel P Birnbaum; Jack A Kosmicki; Laramie E Duncan; Karol Estrada; Fengmei Zhao; James Zou; Emma Pierce-Hoffman; Joanne Berghout; David N Cooper; Nicole Deflaux; Mark DePristo; Ron Do; Jason Flannick; Menachem Fromer; Laura Gauthier; Jackie Goldstein; Namrata Gupta; Daniel Howrigan; Adam Kiezun; Mitja I Kurki; Ami Levy Moonshine; Pradeep Natarajan; Lorena Orozco; Gina M Peloso; Ryan Poplin; Manuel A Rivas; Valentin Ruano-Rubio; Samuel A Rose; Douglas M Ruderfer; Khalid Shakir; Peter D Stenson; Christine Stevens; Brett P Thomas; Grace Tiao; Maria T Tusie-Luna; Ben Weisburd; Hong-Hee Won; Dongmei Yu; David M Altshuler; Diego Ardissino; Michael Boehnke; John Danesh; Stacey Donnelly; Roberto Elosua; Jose C Florez; Stacey B Gabriel; Gad Getz; Stephen J Glatt; Christina M Hultman; Sekar Kathiresan; Markku Laakso; Steven McCarroll; Mark I McCarthy; Dermot McGovern; Ruth McPherson; Benjamin M Neale; Aarno Palotie; Shaun M Purcell; Danish Saleheen; Jeremiah M Scharf; Pamela Sklar; Patrick F Sullivan; Jaakko Tuomilehto; Ming T Tsuang; Hugh C Watkins; James G Wilson; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

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  9 in total

1.  Breakdown of multiple sclerosis genetics to identify an integrated disease network and potential variant mechanisms.

Authors:  C Joy Shepard; Sara G Cline; David Hinds; Seyedehameneh Jahanbakhsh; Jeremy W Prokop
Journal:  Physiol Genomics       Date:  2019-09-04       Impact factor: 3.107

Review 2.  Genetics of Multiple Sclerosis: An Overview and New Directions.

Authors:  Nikolaos A Patsopoulos
Journal:  Cold Spring Harb Perspect Med       Date:  2018-07-02       Impact factor: 6.915

Review 3.  Exome and genome sequencing for inborn errors of immunity.

Authors:  Isabelle Meyts; Barbara Bosch; Alexandre Bolze; Bertrand Boisson; Yuval Itan; Aziz Belkadi; Vincent Pedergnana; Leen Moens; Capucine Picard; Aurélie Cobat; Xavier Bossuyt; Laurent Abel; Jean-Laurent Casanova
Journal:  J Allergy Clin Immunol       Date:  2016-10       Impact factor: 10.793

4.  Linkage analysis and whole exome sequencing identify a novel candidate gene in a Dutch multiple sclerosis family.

Authors:  Julia Y Mescheriakova; Annemieke Jmh Verkerk; Najaf Amin; André G Uitterlinden; Cornelia M van Duijn; Rogier Q Hintzen
Journal:  Mult Scler       Date:  2018-06-06       Impact factor: 6.312

5.  Exome sequencing in multiple sclerosis families identifies 12 candidate genes and nominates biological pathways for the genesis of disease.

Authors:  Carles Vilariño-Güell; Alexander Zimprich; Filippo Martinelli-Boneschi; Bruno Herculano; Zhe Wang; Fuencisla Matesanz; Elena Urcelay; Koen Vandenbroeck; Laura Leyva; Denis Gris; Charbel Massaad; Jacqueline A Quandt; Anthony L Traboulsee; Mary Encarnacion; Cecily Q Bernales; Jordan Follett; Irene M Yee; Maria G Criscuoli; Angela Deutschländer; Eva M Reinthaler; Tobias Zrzavy; Elisabetta Mascia; Andrea Zauli; Federica Esposito; Antonio Alcina; Guillermo Izquierdo; Laura Espino-Paisán; Jorge Mena; Alfredo Antigüedad; Patricia Urbaneja-Romero; Jesús Ortega-Pinazo; Weihong Song; A Dessa Sadovnick
Journal:  PLoS Genet       Date:  2019-06-06       Impact factor: 5.917

Review 6.  Predicting Multiple Sclerosis: Challenges and Opportunities.

Authors:  Luke Hone; Gavin Giovannoni; Ruth Dobson; Benjamin Meir Jacobs
Journal:  Front Neurol       Date:  2022-02-08       Impact factor: 4.086

7.  Whole Exome Sequencing in Multi-Incident Families Identifies Novel Candidate Genes for Multiple Sclerosis.

Authors:  Julia Horjus; Tineke van Mourik-Banda; Marco A P Heerings; Marina Hakobjan; Ward De Witte; Dorothea J Heersema; Anne J Jansen; Eva M M Strijbis; Brigit A de Jong; Astrid E J Slettenaar; Esther M P E Zeinstra; Erwin L J Hoogervorst; Barbara Franke; Wiebe Kruijer; Peter J Jongen; Leo J Visser; Geert Poelmans
Journal:  Int J Mol Sci       Date:  2022-09-28       Impact factor: 6.208

8.  Corticohippocampal Dysfunction In The OBiden Mouse Model Of Primary Oligodendrogliopathy.

Authors:  Daniel Z Radecki; Elizabeth L Johnson; Ashley K Brown; Nicholas T Meshkin; Shane A Perrine; Alexander Gow
Journal:  Sci Rep       Date:  2018-10-31       Impact factor: 4.379

Review 9.  Pathogenic Mechanisms Associated With Different Clinical Courses of Multiple Sclerosis.

Authors:  Hans Lassmann
Journal:  Front Immunol       Date:  2019-01-10       Impact factor: 7.561

  9 in total

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