Literature DB >> 27762232

Impact of negative feedback in metabolic noise propagation.

Alessandro Borri1, Pasquale Palumbo2, Abhyudai Singh3.   

Abstract

Synthetic biology combines different branches of biology and engineering aimed at designing synthetic biological circuits able to replicate emergent properties useful for the biotechnology industry, human health and environment. The role of negative feedback in noise propagation for a basic enzymatic reaction scheme is investigated. Two feedback control schemes on enzyme expression are considered: one from the final product of the pathway activity, the other from the enzyme accumulation. Both schemes are designed to provide the same steady-state average values of the involved players, in order to evaluate the feedback performances according to the same working mode. Computations are carried out numerically and analytically, the latter allowing to infer information on which model parameter setting leads to a more efficient noise attenuation, according to the chosen scheme. In addition to highlighting the role of the feedback in providing a substantial noise reduction, our investigation concludes that the effect of feedback is enhanced by increasing the promoter sensitivity for both schemes. A further interesting biological insight is that an increase in the promoter sensitivity provides more benefits to the feedback from the product with respect to the feedback from the enzyme, in terms of enlarging the parameter design space.

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Year:  2016        PMID: 27762232      PMCID: PMC8687250          DOI: 10.1049/iet-syb.2016.0003

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  21 in total

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Journal:  Nat Genet       Date:  2004-04-25       Impact factor: 38.330

3.  Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits.

Authors:  Mohammad Soltani; Cesar Augusto Vargas-Garcia; Abhyudai Singh
Journal:  IEEE Trans Biomed Circuits Syst       Date:  2015-08-27       Impact factor: 3.833

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Authors:  Yang Cao; Daniel T Gillespie; Linda R Petzold
Journal:  J Chem Phys       Date:  2005-10-08       Impact factor: 3.488

Review 5.  Modularity, context-dependence, and insulation in engineered biological circuits.

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Journal:  Trends Biotechnol       Date:  2014-12-24       Impact factor: 19.536

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Authors:  L A Segel
Journal:  Bull Math Biol       Date:  1988       Impact factor: 1.758

7.  Noise propagation in synthetic gene circuits for metabolic control.

Authors:  Diego A Oyarzún; Jean-Baptiste Lugagne; Guy-Bart V Stan
Journal:  ACS Synth Biol       Date:  2014-05-01       Impact factor: 5.110

8.  Protein sequestration generates a flexible ultrasensitive response in a genetic network.

Authors:  Nicolas E Buchler; Frederick R Cross
Journal:  Mol Syst Biol       Date:  2009-05-19       Impact factor: 11.429

9.  Noise propagation in gene regulation networks involving interlinked positive and negative feedback loops.

Authors:  Hui Zhang; Yueling Chen; Yong Chen
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

10.  Colored extrinsic fluctuations and stochastic gene expression.

Authors:  Vahid Shahrezaei; Julien F Ollivier; Peter S Swain
Journal:  Mol Syst Biol       Date:  2008-05-06       Impact factor: 11.429

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  3 in total

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Review 2.  Microbial metabolic noise.

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