Literature DB >> 27760318

PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation.

Brianna J Klein1, Xiaoyan Wang2, Gaofeng Cui3, Chao Yuan4, Maria Victoria Botuyan3, Kevin Lin4, Yue Lu4, Xiaolu Wang4, Yue Zhao5, Christiane J Bruns6, Georges Mer7, Xiaobing Shi8, Tatiana G Kutateladze9.   

Abstract

PHF20 is a core component of the lysine acetyltransferase complex MOF (male absent on the first)-NSL (non-specific lethal) that generates the major epigenetic mark H4K16ac and is necessary for transcriptional regulation and DNA repair. The role of PHF20 in the complex remains elusive. Here, we report on functional coupling between methylation readers in PHF20. We show that the plant homeodomain (PHD) finger of PHF20 recognizes dimethylated lysine 4 of histone H3 (H3K4me2) and represents an example of a native reader that selects for this modification. Biochemical and structural analyses help to explain this selectivity and the preference of Tudor2, another reader in PHF20, for dimethylated p53. Binding of the PHD finger to H3K4me2 is required for histone acetylation, accumulation of PHF20 at target genes, and transcriptional activation. Together, our findings establish a unique PHF20-mediated link between MOF histone acetyltransferase (HAT), p53, and H3K4me2, and suggest a model for rapid spreading of H4K16ac-enriched open chromatin.
Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  MOF; PHD finger; PHF20; Tudor; chromatin; histone acetylation; histone methylation; p53

Mesh:

Substances:

Year:  2016        PMID: 27760318      PMCID: PMC5125728          DOI: 10.1016/j.celrep.2016.09.056

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  54 in total

1.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Authors:  Pedro V Peña; Foteini Davrazou; Xiaobing Shi; Kay L Walter; Vladislav V Verkhusha; Or Gozani; Rui Zhao; Tatiana G Kutateladze
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

2.  Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4.

Authors:  Michiel Vermeulen; Klaas W Mulder; Sergei Denissov; W W M Pim Pijnappel; Frederik M A van Schaik; Radhika A Varier; Marijke P A Baltissen; Henk G Stunnenberg; Matthias Mann; H Th Marc Timmers
Journal:  Cell       Date:  2007-09-20       Impact factor: 41.582

3.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Solution structure and dynamics of yeast elongin C in complex with a von Hippel-Lindau peptide.

Authors:  M V Botuyan; G Mer; G S Yi; C M Koth; D A Case; A M Edwards; W J Chazin; C H Arrowsmith
Journal:  J Mol Biol       Date:  2001-09-07       Impact factor: 5.469

6.  New perspectives for the regulation of acetyltransferase MOF.

Authors:  Xiangzhi Li; Yali Dou
Journal:  Epigenetics       Date:  2010-04-01       Impact factor: 4.528

7.  Jmjd3 inhibits reprogramming by upregulating expression of INK4a/Arf and targeting PHF20 for ubiquitination.

Authors:  Wei Zhao; Qingtian Li; Stephen Ayers; Yifeng Gu; Zhong Shi; Qingyuan Zhu; Yidong Chen; Helen Y Wang; Rong-Fu Wang
Journal:  Cell       Date:  2013-02-28       Impact factor: 41.582

8.  Identification of Akt interaction protein PHF20/TZP that transcriptionally regulates p53.

Authors:  Sungman Park; Donghwa Kim; Han C Dan; Huihua Chen; Joseph R Testa; Jin Q Cheng
Journal:  J Biol Chem       Date:  2012-02-14       Impact factor: 5.157

Review 9.  Handpicking epigenetic marks with PHD fingers.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

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  18 in total

1.  PHF20 collaborates with PARP1 to promote stemness and aggressiveness of neuroblastoma cells through activation of SOX2 and OCT4.

Authors:  Wenyong Long; Wei Zhao; Bo Ning; Jing Huang; Junjun Chu; Linfeng Li; Qianquan Ma; Changsheng Xing; Helen Y Wang; Qing Liu; Rong-Fu Wang
Journal:  J Mol Cell Biol       Date:  2018-04-01       Impact factor: 6.216

Review 2.  The many lives of KATs - detectors, integrators and modulators of the cellular environment.

Authors:  Bilal N Sheikh; Asifa Akhtar
Journal:  Nat Rev Genet       Date:  2019-01       Impact factor: 53.242

Review 3.  The language of chromatin modification in human cancers.

Authors:  Shuai Zhao; C David Allis; Gang Greg Wang
Journal:  Nat Rev Cancer       Date:  2021-05-17       Impact factor: 60.716

4.  PHF20 positively regulates osteoblast differentiation via increasing the expression and activation of Runx2 with enrichment of H3K4me3.

Authors:  Jin-Woo Yang; Byung-Chul Jeong; Jongsun Park; Jeong-Tae Koh
Journal:  Sci Rep       Date:  2017-08-14       Impact factor: 4.379

5.  Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains.

Authors:  Alessio Bortoluzzi; Anastasia Amato; Xavier Lucas; Manuel Blank; Alessio Ciulli
Journal:  Biochem J       Date:  2017-05-04       Impact factor: 3.857

6.  The ZZ domain of p300 mediates specificity of the adjacent HAT domain for histone H3.

Authors:  Yi Zhang; Yongming Xue; Jiejun Shi; JaeWoo Ahn; Wenyi Mi; Muzaffar Ali; Xiaolu Wang; Brianna J Klein; Hong Wen; Wei Li; Xiaobing Shi; Tatiana G Kutateladze
Journal:  Nat Struct Mol Biol       Date:  2018-08-27       Impact factor: 15.369

Review 7.  The non-specific lethal (NSL) complex at the crossroads of transcriptional control and cellular homeostasis.

Authors:  Bilal N Sheikh; Sukanya Guhathakurta; Asifa Akhtar
Journal:  EMBO Rep       Date:  2019-06-03       Impact factor: 8.807

8.  A Degenerate Peptide Library Approach to Reveal Sequence Determinants of Methyllysine-Driven Protein Interactions.

Authors:  Ariana Kupai; Robert M Vaughan; Bradley M Dickson; Scott B Rothbart
Journal:  Front Cell Dev Biol       Date:  2020-04-09

9.  Recognition of Histone H3 Methylation States by the PHD1 Domain of Histone Demethylase KDM5A.

Authors:  James E Longbotham; Mark J S Kelly; Danica Galonić Fujimori
Journal:  ACS Chem Biol       Date:  2021-02-23       Impact factor: 4.634

10.  Tricho-rhino-phalangeal syndrome 1 protein functions as a scaffold required for ubiquitin-specific protease 4-directed histone deacetylase 2 de-ubiquitination and tumor growth.

Authors:  Yuzhi Wang; Jun Zhang; Lele Wu; Weiguang Liu; Guanyun Wei; Xue Gong; Yan Liu; Zhifang Ma; Fei Ma; Jean Paul Thiery; Liming Chen
Journal:  Breast Cancer Res       Date:  2018-08-02       Impact factor: 6.466

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