Literature DB >> 27759158

Chromatin assembly and transcriptional cross-talk in Xenopus laevis oocyte and egg extracts.

Wei-Lin Wang1, David Shechter.   

Abstract

Chromatin, primarily a complex of DNA and histone proteins, is the physiological form of the genome. Chromatin is generally repressive for transcription and other information transactions that occur on DNA. A wealth of post-translational modifications on canonical histones and histone variants encode regulatory information to recruit or repel effector proteins on chromatin, promoting and further repressing transcription and thereby form the basis of epigenetic information. During metazoan oogenesis, large quantities of histone proteins are synthesized and stored in preparation for the rapid early cell cycles of development and to elicit maternal control of chromatin assembly pathways. Oocyte and egg cell-free extracts of the frog Xenopus laevis are a compelling model system for the study of chromatin assembly and transcription, precisely because they exist in an extreme state primed for rapid chromatin assembly or for transcriptional activity. We show that chromatin assembly rates are slower in the X. laevis oocyte than in egg extracts, while conversely, only oocyte extracts transcribe template plasmids. We demonstrate that rapid chromatin assembly in egg extracts represses RNA Polymerase II dependent transcription, while pre-binding of TATA-Binding Protein (TBP) to a template plasmid promotes transcription. Our experimental evidence presented here supports a model in which chromatin assembly and transcription are in competition and that the onset of zygotic genomic activation may be in part due to stable transcriptional complex assembly.

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Year:  2016        PMID: 27759158      PMCID: PMC5094458          DOI: 10.1387/ijdb.160161ds

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.203


  28 in total

Review 1.  Cell cycle transitions in early Xenopus development.

Authors:  J L Maller; S D Gross; M S Schwab; C V Finkielstein; F E Taieb; Y W Qian
Journal:  Novartis Found Symp       Date:  2001

Review 2.  Embryonic cleavage cycles: how is a mouse like a fly?

Authors:  Patrick H O'Farrell; Jason Stumpff; Tin Tin Su
Journal:  Curr Biol       Date:  2004-01-06       Impact factor: 10.834

3.  In vitro transcription by RNA polymerase II in extracts of Xenopus oocytes, eggs, and somatic cells.

Authors:  T Toyoda; A P Wolffe
Journal:  Anal Biochem       Date:  1992-06       Impact factor: 3.365

Review 4.  The maternal-zygotic transition: death and birth of RNAs.

Authors:  Alexander F Schier
Journal:  Science       Date:  2007-04-20       Impact factor: 47.728

5.  Transcription complex disruption caused by a transition in chromatin structure.

Authors:  G Almouzni; M Méchali; A P Wolffe
Journal:  Mol Cell Biol       Date:  1991-02       Impact factor: 4.272

6.  Transcription factor access to DNA in the nucleosome.

Authors:  A P Wolffe; G Almouzni; K Ura; D Pruss; J J Hayes
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1993

7.  Histone titration against the genome sets the DNA-to-cytoplasm threshold for the Xenopus midblastula transition.

Authors:  Amanda A Amodeo; David Jukam; Aaron F Straight; Jan M Skotheim
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-23       Impact factor: 11.205

8.  Developmentally Regulated Post-translational Modification of Nucleoplasmin Controls Histone Sequestration and Deposition.

Authors:  Takashi Onikubo; Joshua J Nicklay; Li Xing; Christopher Warren; Brandon Anson; Wei-Lin Wang; Emmanuel S Burgos; Sophie E Ruff; Jeffrey Shabanowitz; R Holland Cheng; Donald F Hunt; David Shechter
Journal:  Cell Rep       Date:  2015-03-12       Impact factor: 9.423

9.  Competition between chromatin and transcription complex assembly regulates gene expression during early development.

Authors:  M N Prioleau; J Huet; A Sentenac; M Méchali
Journal:  Cell       Date:  1994-05-06       Impact factor: 41.582

10.  A distinct H2A.X isoform is enriched in Xenopus laevis eggs and early embryos and is phosphorylated in the absence of a checkpoint.

Authors:  David Shechter; Raghu K Chitta; Andrew Xiao; Jeffrey Shabanowitz; Donald F Hunt; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-08       Impact factor: 11.205

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  6 in total

1.  Cell-free transcription in Xenopus egg extract.

Authors:  John K Barrows; David T Long
Journal:  J Biol Chem       Date:  2019-11-15       Impact factor: 5.157

2.  Nuclear F-actin and Lamin A antagonistically modulate nuclear shape.

Authors:  Sampada Mishra; Daniel L Levy
Journal:  J Cell Sci       Date:  2022-07-04       Impact factor: 5.235

Review 3.  Chaperone-mediated chromatin assembly and transcriptional regulation in Xenopus laevis.

Authors:  Takashi Onikubo; David Shechter
Journal:  Int J Dev Biol       Date:  2016       Impact factor: 2.203

4.  Chromatin Characterization in Xenopus laevis Cell-Free Egg Extracts and Embryos.

Authors:  Wei-Lin Wang; Takashi Onikubo; David Shechter
Journal:  Cold Spring Harb Protoc       Date:  2019-02-01

5.  Topoisomerase II Is Crucial for Fork Convergence during Vertebrate Replication Termination.

Authors:  Darren R Heintzman; Lillian V Campos; Jo Ann W Byl; Neil Osheroff; James M Dewar
Journal:  Cell Rep       Date:  2019-10-08       Impact factor: 9.423

6.  A non-transcriptional function of Yap regulates the DNA replication program in Xenopus laevis.

Authors:  Rodrigo Meléndez García; Olivier Haccard; Albert Chesneau; Hemalatha Narassimprakash; Jérôme Roger; Muriel Perron; Kathrin Marheineke; Odile Bronchain
Journal:  Elife       Date:  2022-07-15       Impact factor: 8.713

  6 in total

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