| Literature DB >> 27746940 |
Martin van Megen1, Guido J Reiss1, Walter Frank1.
Abstract
The asymmetric unit of the title mol-ecular salt, [C5H7N2+][(HO)2OP(CH2)9PO2(OH)-], consists of one 4-amino-pyridinium cation and one hydrogen (9-phos-phono-non-yl)phospho-nate anion, both in general positions. As expected, the 4-amino-pyridinium moieties are protonated exclusively at their endocyclic nitro-gen atom due to a mesomeric stabilization by the imine form which would not be given in the corresponding double-protonated dicationic species. In the crystal, the phosphonyl (-PO3H2) and hydrogen phospho-nate (-PO3H) groups of the anions form two-dimensional O-H⋯O hydrogen-bonded networks in the ab plane built from 24-membered hydrogen-bonded ring motifs with the graph-set descriptor R66(24). These networks are pairwise linked by the anions' alkyl-ene chains. The 4-amino-pyridinium cations are stacked in parallel displaced face-to-face arrangements and connect neighboring anionic substructures via medium-strong charge-supported N-H⋯O hydrogen bonds along the c axis. The resulting three-dimensional hydrogen-bonded network shows clearly separated hydro-philic and hydro-phobic structural domains.Entities:
Keywords: 4-aminopyridinium; bis(phosphonate); crystal structure; hydrogen bonding
Year: 2016 PMID: 27746940 PMCID: PMC5050775 DOI: 10.1107/S2056989016014298
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of the title compound plus symmetry-related hydrogen-bonded atoms [displacement ellipsoids are drawn at the 50% probability level; hydrogen atoms are drawn as spheres with arbitrary radii; symmetry codes: (i) 1 + x, −1 + y, 1 + z; (ii) x, −1 + y, 1 + z; (iii) 1 − x, 2 − y, 1 − z; (iv) 1 − x, 1 − y, 1 − z; (v) −x, 1 − y, 1 − z; (vi) −1 + x, 1 + y, −1 + z, (vii) x, 1 + y, −1 + z].
Figure 2Two-dimensional hydrogen-bonded networks composed of phosphonyl and hydrogen phosphonate groups. The graph set (24) is indicated by blue bonds.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3⋯O6i | 0.78 (3) | 1.85 (3) | 2.6171 (18) | 166 (3) |
| O5—H5⋯O1ii | 0.88 (3) | 1.64 (3) | 2.5059 (18) | 168 (3) |
| O4—H4⋯O2iii | 0.91 (3) | 1.59 (3) | 2.4977 (17) | 178 (3) |
| N1—H1⋯O6 | 0.96 (2) | 1.74 (3) | 2.696 (2) | 173 (2) |
| N2—H22⋯O2iv | 0.90 (3) | 1.92 (3) | 2.806 (2) | 170 (2) |
| N2—H21⋯O1v | 0.88 (3) | 2.14 (3) | 2.965 (2) | 156 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .
Figure 3View along [010] of the title structure, showing the hydrogen bonding (red), π–π stacking (blue), and van der Waals forces (grey) dominated layered regions within the three-dimensional network.
Experimental details
| Crystal data | |
| Chemical formula | C5H7N2 +·C9H21O6P2 − |
|
| 382.32 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 123 |
|
| 6.7275 (4), 6.8963 (4), 20.0643 (10) |
| α, β, γ (°) | 97.956 (4), 98.767 (4), 94.309 (5) |
|
| 906.73 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.27 |
| Crystal size (mm) | 0.33 × 0.07 × 0.03 |
| Data collection | |
| Diffractometer | Stoe IPDS |
| No. of measured, independent and observed [ | 8855, 4131, 3674 |
|
| 0.029 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.038, 0.079, 1.02 |
| No. of reflections | 4131 |
| No. of parameters | 241 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.50, −0.36 |
Computer programs: X-AREA (Stoe & Cie, 2002 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL-2014/7 (Sheldrick, 2015b ▸) and DIAMOND (Brandenburg, 2015 ▸).
Figure 4The IR (blue) and Raman (red) spectra of the title compound.
| C5H7N2+·C9H21O6P2− | |
| Triclinic, | |
| Mo | |
| Cell parameters from 6853 reflections | |
| θ = 3.0–35.3° | |
| α = 97.956 (4)° | µ = 0.27 mm−1 |
| β = 98.767 (4)° | |
| γ = 94.309 (5)° | Platelet, colourless |
| 0.33 × 0.07 × 0.03 mm |
| Stoe IPDS diffractometer | |
| Radiation source: sealed tube | θmax = 27.5°, θmin = 3.0° |
| ω scans | |
| 8855 measured reflections | |
| 4131 independent reflections | |
| 3674 reflections with |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 4131 reflections | Δρmax = 0.50 e Å−3 |
| 241 parameters | Δρmin = −0.36 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| P1 | 0.29655 (6) | 1.15924 (6) | 0.22320 (2) | 0.01579 (10) | |
| O1 | 0.14667 (19) | 1.0094 (2) | 0.17549 (6) | 0.0230 (3) | |
| N1 | 0.5995 (3) | 0.2836 (2) | 0.92948 (8) | 0.0257 (3) | |
| H1 | 0.553 (4) | 0.306 (4) | 0.8838 (13) | 0.036 (6)* | |
| C1 | 0.2470 (3) | 1.1616 (3) | 0.30883 (8) | 0.0179 (3) | |
| H1A | 0.3161 | 1.2802 | 0.3371 | 0.021* | |
| H1B | 0.1032 | 1.1663 | 0.3086 | 0.021* | |
| P2 | 0.24757 (6) | 0.29013 (6) | 0.77082 (2) | 0.01589 (10) | |
| O2 | 0.51802 (18) | 1.13618 (18) | 0.22159 (6) | 0.0199 (3) | |
| N2 | 0.7740 (3) | 0.1858 (3) | 1.12583 (8) | 0.0252 (3) | |
| H21 | 0.901 (4) | 0.169 (4) | 1.1403 (14) | 0.049 (8)* | |
| H22 | 0.681 (4) | 0.172 (4) | 1.1527 (12) | 0.035 (6)* | |
| C2 | 0.3143 (3) | 0.9827 (3) | 0.34082 (8) | 0.0191 (3) | |
| H2A | 0.2686 | 0.8640 | 0.3084 | 0.023* | |
| H2B | 0.4608 | 0.9929 | 0.3504 | 0.023* | |
| O3 | 0.2486 (2) | 1.3660 (2) | 0.20293 (7) | 0.0239 (3) | |
| C3 | 0.2306 (3) | 0.9668 (3) | 0.40681 (8) | 0.0191 (3) | |
| H3A | 0.2699 | 1.0891 | 0.4379 | 0.023* | |
| H3B | 0.0842 | 0.9503 | 0.3964 | 0.023* | |
| H3 | 0.343 (5) | 1.442 (5) | 0.2068 (17) | 0.070 (11)* | |
| O4 | 0.24107 (19) | 0.08343 (18) | 0.72796 (6) | 0.0188 (2) | |
| C4 | 0.3028 (3) | 0.7975 (3) | 0.44244 (8) | 0.0195 (3) | |
| H4A | 0.4490 | 0.8157 | 0.4542 | 0.023* | |
| H4B | 0.2664 | 0.6752 | 0.4112 | 0.023* | |
| H4 | 0.330 (5) | 0.006 (5) | 0.7471 (16) | 0.066 (9)* | |
| O5 | 0.1083 (2) | 0.27587 (19) | 0.82576 (6) | 0.0216 (3) | |
| C5 | 0.2125 (3) | 0.7822 (3) | 0.50710 (9) | 0.0195 (3) | |
| H5A | 0.2483 | 0.9055 | 0.5379 | 0.023* | |
| H5B | 0.0664 | 0.7648 | 0.4950 | 0.023* | |
| H5 | 0.017 (5) | 0.174 (5) | 0.8191 (16) | 0.064 (9)* | |
| O6 | 0.45679 (19) | 0.37295 (19) | 0.80557 (6) | 0.0220 (3) | |
| C6 | 0.2806 (3) | 0.6151 (3) | 0.54491 (8) | 0.0188 (3) | |
| H6A | 0.4264 | 0.6325 | 0.5579 | 0.023* | |
| H6B | 0.2450 | 0.4910 | 0.5146 | 0.023* | |
| C7 | 0.1838 (3) | 0.6074 (3) | 0.60867 (8) | 0.0179 (3) | |
| H7A | 0.0383 | 0.5858 | 0.5951 | 0.022* | |
| H7B | 0.2146 | 0.7341 | 0.6377 | 0.022* | |
| C8 | 0.2526 (3) | 0.4476 (3) | 0.65035 (8) | 0.0180 (3) | |
| H8A | 0.3972 | 0.4716 | 0.6661 | 0.022* | |
| H8B | 0.2261 | 0.3205 | 0.6214 | 0.022* | |
| C9 | 0.1432 (3) | 0.4431 (3) | 0.71211 (8) | 0.0175 (3) | |
| H9A | 0.0022 | 0.3966 | 0.6959 | 0.021* | |
| H9B | 0.1488 | 0.5762 | 0.7360 | 0.021* | |
| C10 | 0.7973 (3) | 0.2769 (3) | 0.95325 (10) | 0.0283 (4) | |
| H10 | 0.8919 | 0.2928 | 0.9247 | 0.034* | |
| C11 | 0.8604 (3) | 0.2470 (3) | 1.01867 (9) | 0.0272 (4) | |
| H11 | 0.9972 | 0.2420 | 1.0341 | 0.033* | |
| C12 | 0.7189 (3) | 0.2236 (3) | 1.06310 (9) | 0.0199 (3) | |
| C13 | 0.5127 (3) | 0.2384 (3) | 1.03659 (9) | 0.0214 (4) | |
| H13 | 0.4144 | 0.2288 | 1.0642 | 0.026* | |
| C14 | 0.4601 (3) | 0.2665 (3) | 0.97075 (10) | 0.0242 (4) | |
| H14 | 0.3249 | 0.2741 | 0.9537 | 0.029* |
| P1 | 0.01293 (19) | 0.0198 (2) | 0.0158 (2) | 0.00022 (16) | 0.00233 (15) | 0.00733 (16) |
| O1 | 0.0224 (6) | 0.0286 (7) | 0.0167 (6) | −0.0056 (5) | 0.0023 (5) | 0.0042 (5) |
| N1 | 0.0360 (9) | 0.0236 (8) | 0.0159 (7) | 0.0009 (7) | −0.0008 (6) | 0.0036 (6) |
| C1 | 0.0179 (8) | 0.0202 (8) | 0.0161 (8) | −0.0003 (6) | 0.0038 (6) | 0.0048 (6) |
| P2 | 0.0175 (2) | 0.0167 (2) | 0.01360 (19) | −0.00040 (16) | 0.00111 (15) | 0.00535 (15) |
| O2 | 0.0163 (6) | 0.0239 (6) | 0.0228 (6) | 0.0042 (5) | 0.0057 (5) | 0.0111 (5) |
| N2 | 0.0187 (8) | 0.0392 (10) | 0.0194 (7) | 0.0036 (7) | 0.0035 (6) | 0.0097 (7) |
| C2 | 0.0185 (8) | 0.0237 (9) | 0.0162 (8) | 0.0015 (7) | 0.0030 (6) | 0.0072 (6) |
| O3 | 0.0158 (6) | 0.0267 (7) | 0.0328 (7) | 0.0026 (5) | 0.0047 (5) | 0.0162 (6) |
| C3 | 0.0195 (8) | 0.0229 (9) | 0.0163 (8) | 0.0003 (7) | 0.0047 (6) | 0.0066 (6) |
| O4 | 0.0190 (6) | 0.0194 (6) | 0.0178 (6) | 0.0029 (5) | 0.0014 (5) | 0.0036 (5) |
| C4 | 0.0201 (8) | 0.0239 (9) | 0.0161 (8) | 0.0009 (7) | 0.0038 (6) | 0.0079 (6) |
| O5 | 0.0280 (7) | 0.0206 (6) | 0.0170 (6) | −0.0021 (5) | 0.0070 (5) | 0.0041 (5) |
| C5 | 0.0209 (8) | 0.0217 (8) | 0.0169 (8) | 0.0002 (7) | 0.0039 (6) | 0.0063 (6) |
| O6 | 0.0216 (6) | 0.0228 (6) | 0.0202 (6) | −0.0045 (5) | −0.0032 (5) | 0.0091 (5) |
| C6 | 0.0193 (8) | 0.0221 (8) | 0.0161 (8) | 0.0008 (7) | 0.0041 (6) | 0.0056 (6) |
| C7 | 0.0195 (8) | 0.0199 (8) | 0.0153 (7) | 0.0014 (6) | 0.0029 (6) | 0.0060 (6) |
| C8 | 0.0191 (8) | 0.0200 (8) | 0.0157 (7) | 0.0019 (6) | 0.0027 (6) | 0.0058 (6) |
| C9 | 0.0178 (8) | 0.0198 (8) | 0.0157 (7) | 0.0020 (6) | 0.0027 (6) | 0.0054 (6) |
| C10 | 0.0305 (10) | 0.0338 (11) | 0.0206 (9) | 0.0008 (8) | 0.0077 (7) | 0.0020 (8) |
| C11 | 0.0206 (9) | 0.0390 (11) | 0.0215 (9) | 0.0018 (8) | 0.0038 (7) | 0.0032 (8) |
| C12 | 0.0212 (8) | 0.0192 (8) | 0.0184 (8) | 0.0008 (7) | 0.0025 (6) | 0.0014 (6) |
| C13 | 0.0206 (8) | 0.0207 (8) | 0.0232 (9) | 0.0010 (7) | 0.0039 (7) | 0.0047 (7) |
| C14 | 0.0249 (9) | 0.0206 (9) | 0.0254 (9) | 0.0022 (7) | −0.0020 (7) | 0.0046 (7) |
| P1—O1 | 1.5088 (13) | C4—H4A | 0.9700 |
| P1—O2 | 1.5149 (12) | C4—H4B | 0.9700 |
| P1—O3 | 1.5786 (14) | O5—H5 | 0.88 (3) |
| P1—C1 | 1.7974 (17) | C5—C6 | 1.526 (2) |
| N1—C10 | 1.350 (3) | C5—H5A | 0.9700 |
| N1—C14 | 1.352 (3) | C5—H5B | 0.9700 |
| N1—H1 | 0.96 (2) | C6—C7 | 1.527 (2) |
| C1—C2 | 1.534 (2) | C6—H6A | 0.9700 |
| C1—H1A | 0.9700 | C6—H6B | 0.9700 |
| C1—H1B | 0.9700 | C7—C8 | 1.530 (2) |
| P2—O6 | 1.5045 (13) | C7—H7A | 0.9700 |
| P2—O4 | 1.5535 (13) | C7—H7B | 0.9700 |
| P2—O5 | 1.5601 (13) | C8—C9 | 1.537 (2) |
| P2—C9 | 1.7880 (17) | C8—H8A | 0.9700 |
| N2—C12 | 1.324 (2) | C8—H8B | 0.9700 |
| N2—H21 | 0.88 (3) | C9—H9A | 0.9700 |
| N2—H22 | 0.90 (3) | C9—H9B | 0.9700 |
| C2—C3 | 1.530 (2) | C10—C11 | 1.365 (3) |
| C2—H2A | 0.9700 | C10—H10 | 0.9300 |
| C2—H2B | 0.9700 | C11—C12 | 1.415 (3) |
| O3—H3 | 0.78 (3) | C11—H11 | 0.9300 |
| C3—C4 | 1.523 (2) | C12—C13 | 1.425 (2) |
| C3—H3A | 0.9700 | C13—C14 | 1.359 (3) |
| C3—H3B | 0.9700 | C13—H13 | 0.9300 |
| O4—H4 | 0.91 (3) | C14—H14 | 0.9300 |
| C4—C5 | 1.527 (2) | ||
| O1—P1—O2 | 116.41 (8) | C6—C5—C4 | 114.77 (15) |
| O1—P1—O3 | 105.96 (8) | C6—C5—H5A | 108.6 |
| O2—P1—O3 | 108.76 (7) | C4—C5—H5A | 108.6 |
| O1—P1—C1 | 109.09 (8) | C6—C5—H5B | 108.6 |
| O2—P1—C1 | 109.62 (7) | C4—C5—H5B | 108.6 |
| O3—P1—C1 | 106.51 (8) | H5A—C5—H5B | 107.6 |
| C10—N1—C14 | 120.49 (16) | C5—C6—C7 | 112.06 (14) |
| C10—N1—H1 | 121.8 (15) | C5—C6—H6A | 109.2 |
| C14—N1—H1 | 117.6 (15) | C7—C6—H6A | 109.2 |
| C2—C1—P1 | 113.66 (12) | C5—C6—H6B | 109.2 |
| C2—C1—H1A | 108.8 | C7—C6—H6B | 109.2 |
| P1—C1—H1A | 108.8 | H6A—C6—H6B | 107.9 |
| C2—C1—H1B | 108.8 | C6—C7—C8 | 114.51 (14) |
| P1—C1—H1B | 108.8 | C6—C7—H7A | 108.6 |
| H1A—C1—H1B | 107.7 | C8—C7—H7A | 108.6 |
| O6—P2—O4 | 113.40 (7) | C6—C7—H7B | 108.6 |
| O6—P2—O5 | 109.15 (7) | C8—C7—H7B | 108.6 |
| O4—P2—O5 | 108.70 (7) | H7A—C7—H7B | 107.6 |
| O6—P2—C9 | 111.12 (8) | C7—C8—C9 | 111.67 (14) |
| O4—P2—C9 | 105.43 (8) | C7—C8—H8A | 109.3 |
| O5—P2—C9 | 108.89 (8) | C9—C8—H8A | 109.3 |
| C12—N2—H21 | 119.9 (18) | C7—C8—H8B | 109.3 |
| C12—N2—H22 | 119.6 (16) | C9—C8—H8B | 109.3 |
| H21—N2—H22 | 120 (2) | H8A—C8—H8B | 107.9 |
| C3—C2—C1 | 112.06 (14) | C8—C9—P2 | 113.70 (12) |
| C3—C2—H2A | 109.2 | C8—C9—H9A | 108.8 |
| C1—C2—H2A | 109.2 | P2—C9—H9A | 108.8 |
| C3—C2—H2B | 109.2 | C8—C9—H9B | 108.8 |
| C1—C2—H2B | 109.2 | P2—C9—H9B | 108.8 |
| H2A—C2—H2B | 107.9 | H9A—C9—H9B | 107.7 |
| P1—O3—H3 | 115 (2) | N1—C10—C11 | 120.95 (18) |
| C4—C3—C2 | 113.89 (15) | N1—C10—H10 | 119.5 |
| C4—C3—H3A | 108.8 | C11—C10—H10 | 119.5 |
| C2—C3—H3A | 108.8 | C10—C11—C12 | 120.38 (18) |
| C4—C3—H3B | 108.8 | C10—C11—H11 | 119.8 |
| C2—C3—H3B | 108.8 | C12—C11—H11 | 119.8 |
| H3A—C3—H3B | 107.7 | N2—C12—C11 | 121.92 (17) |
| P2—O4—H4 | 113 (2) | N2—C12—C13 | 121.32 (17) |
| C3—C4—C5 | 112.68 (15) | C11—C12—C13 | 116.75 (16) |
| C3—C4—H4A | 109.1 | C14—C13—C12 | 119.77 (17) |
| C5—C4—H4A | 109.1 | C14—C13—H13 | 120.1 |
| C3—C4—H4B | 109.1 | C12—C13—H13 | 120.1 |
| C5—C4—H4B | 109.1 | N1—C14—C13 | 121.60 (18) |
| H4A—C4—H4B | 107.8 | N1—C14—H14 | 119.2 |
| P2—O5—H5 | 117 (2) | C13—C14—H14 | 119.2 |
| O1—P1—C1—C2 | 74.30 (14) | O6—P2—C9—C8 | 66.99 (14) |
| O2—P1—C1—C2 | −54.24 (14) | O4—P2—C9—C8 | −56.25 (14) |
| O3—P1—C1—C2 | −171.74 (12) | O5—P2—C9—C8 | −172.75 (12) |
| P1—C1—C2—C3 | −167.86 (12) | C14—N1—C10—C11 | 1.9 (3) |
| C1—C2—C3—C4 | −176.88 (14) | N1—C10—C11—C12 | −0.4 (3) |
| C2—C3—C4—C5 | −178.52 (15) | C10—C11—C12—N2 | 176.98 (19) |
| C3—C4—C5—C6 | −179.83 (15) | C10—C11—C12—C13 | −1.7 (3) |
| C4—C5—C6—C7 | −179.62 (14) | N2—C12—C13—C14 | −176.38 (18) |
| C5—C6—C7—C8 | −177.72 (15) | C11—C12—C13—C14 | 2.3 (3) |
| C6—C7—C8—C9 | −177.78 (14) | C10—N1—C14—C13 | −1.3 (3) |
| C7—C8—C9—P2 | −169.70 (12) | C12—C13—C14—N1 | −0.9 (3) |
| H··· | ||||
| O3—H3···O6i | 0.78 (3) | 1.85 (3) | 2.6171 (18) | 166 (3) |
| O5—H5···O1ii | 0.88 (3) | 1.64 (3) | 2.5059 (18) | 168 (3) |
| O4—H4···O2iii | 0.91 (3) | 1.59 (3) | 2.4977 (17) | 178 (3) |
| N1—H1···O6 | 0.96 (2) | 1.74 (3) | 2.696 (2) | 173 (2) |
| N2—H22···O2iv | 0.90 (3) | 1.92 (3) | 2.806 (2) | 170 (2) |
| N2—H21···O1v | 0.88 (3) | 2.14 (3) | 2.965 (2) | 156 (3) |