| Literature DB >> 27746921 |
Nurcan Akduran1, Hacali Necefoğlu2, Ömer Aydoğdu3, Tuncer Hökelek4.
Abstract
In the title complex, [Zn(C8H4NO2)2(C10H14N2O)2(H2O)2], the ZnII cation, located on an inversion centre, is coordinated by two water mol-ecules, two 4-cyano-benzoate (CB) anions and two di-ethyl-nicotinamide (DENA) ligands in a distorted N2O4 octa-hedral geometry. In the mol-ecule, the dihedral angle between the planar carboxyl-ate group and the adjacent benzene ring is 9.50 (14)°, while the benzene and pyridine rings are oriented at a dihedral angle of 56.99 (5)°. The water mol-ecules exhibit both an intra-molecular hydrogen bond [to the non-coordinating carboxyl-ate O atom, enclosing an S(6) hydrogen-bonding motif, where O⋯O = 2.6419 (19) Å] and an inter-molecular hydrogen bond [to the amide carbonyl O atom, enclosing an R22(16) ring motif, where O⋯O = 2.827 (2) Å]; the latter lead to the formation of supra-molecular chains propagating along the [110] direction.Entities:
Keywords: benzoate; crystal structure; nicotinamide derivatives; zinc complex
Year: 2016 PMID: 27746921 PMCID: PMC5050756 DOI: 10.1107/S2056989016013815
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title complex, showing the atom-numbering scheme for the asymmetric unit. Unlabelled atoms are generated by the symmetry operation −x, −y, −z. Displacement ellipsoids are drawn at the 40% probability level. Intramolecular O—Hw⋯Oc (w = water and c = non-coordinating carboxylate O atom) hydrogen bonds, enclosing S(6) hydrogen-bonding motifs, are shown as dashed lines.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O4—H41⋯O1i | 0.83 (2) | 1.84 (2) | 2.6419 (19) | 161 (2) |
| O4—H42⋯O3ii | 0.82 (2) | 2.03 (2) | 2.827 (2) | 163 (2) |
Symmetry codes: (i) ; (ii) .
Figure 2Part of the supramolecular chain of the title compound. Intermolecular O—Hw⋯ODENA (ODENA = carbonyl O atom of N,N-diethylnicotinamide) hydrogen bonds, enclosing (16) ring motifs, are shown as dashed lines. The non-bonding H atoms have been omitted for clarity.
Figure 3Part of the crystal structure. Intra- and intermolecular (O—Hw⋯Oc and O—Hw⋯ODENA, respectively) hydrogen bonds are shown as dashed lines (see Table 1 ▸). The non-bonding H atoms have been omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | [Zn(C8H4NO2)2(C10H14N2O)2(H2O)2] |
|
| 750.13 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 296 |
|
| 7.4916 (3), 8.5915 (3), 15.0343 (6) |
| α, β, γ (°) | 86.363 (3), 75.894 (2), 74.390 (2) |
|
| 903.87 (6) |
|
| 1 |
| Radiation type | Mo |
| μ (mm−1) | 0.74 |
| Crystal size (mm) | 0.45 × 0.30 × 0.24 |
| Data collection | |
| Diffractometer | Bruker SMART BREEZE CCD |
| Absorption correction | Multi-scan ( |
|
| 0.74, 0.84 |
| No. of measured, independent and observed [ | 19149, 4366, 4029 |
|
| 0.020 |
| (sin θ/λ)max (Å−1) | 0.666 |
| Refinement | |
|
| 0.032, 0.084, 1.06 |
| No. of reflections | 4366 |
| No. of parameters | 242 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.56, −0.23 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| [Zn(C8H4NO2)2(C10H14N2O)2(H2O)2] | |
| Triclinic, | |
| Mo | |
| Cell parameters from 9994 reflections | |
| θ = 2.8–28.2° | |
| α = 86.363 (3)° | µ = 0.74 mm−1 |
| β = 75.894 (2)° | |
| γ = 74.390 (2)° | Prism, translucent intense colourless |
| 0.45 × 0.30 × 0.24 mm |
| Bruker SMART BREEZE CCD diffractometer | 4366 independent reflections |
| Radiation source: fine-focus sealed tube | 4029 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.3°, θmin = 1.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 19149 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4366 reflections | (Δ/σ)max < 0.001 |
| 242 parameters | Δρmax = 0.56 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Zn1 | 0.0000 | 0.0000 | 0.0000 | 0.02730 (8) | |
| O1 | 0.10666 (18) | 0.0679 (2) | −0.22778 (9) | 0.0585 (4) | |
| O2 | 0.23197 (15) | 0.01976 (13) | −0.10544 (7) | 0.0340 (2) | |
| O3 | 0.51295 (19) | −0.62718 (18) | −0.11834 (9) | 0.0571 (4) | |
| O4 | 0.19075 (17) | −0.10842 (16) | 0.08623 (9) | 0.0414 (3) | |
| H41 | 0.115 (3) | −0.110 (3) | 0.1366 (17) | 0.056 (7)* | |
| H42 | 0.277 (3) | −0.191 (3) | 0.0848 (16) | 0.059 (7)* | |
| N1 | 1.1465 (3) | −0.2028 (3) | −0.46622 (14) | 0.0755 (6) | |
| N2 | 0.02013 (16) | −0.22996 (14) | −0.05596 (8) | 0.0288 (2) | |
| N3 | 0.4843 (2) | −0.58488 (17) | −0.26504 (9) | 0.0402 (3) | |
| C1 | 0.2428 (2) | 0.02304 (18) | −0.19037 (10) | 0.0324 (3) | |
| C2 | 0.4408 (2) | −0.03327 (17) | −0.25173 (10) | 0.0304 (3) | |
| C3 | 0.4653 (2) | −0.0552 (2) | −0.34513 (11) | 0.0423 (4) | |
| H3 | 0.3593 | −0.0388 | −0.3698 | 0.051* | |
| C4 | 0.6461 (3) | −0.1012 (2) | −0.40159 (11) | 0.0466 (4) | |
| H4 | 0.6621 | −0.1157 | −0.4641 | 0.056* | |
| C5 | 0.8044 (2) | −0.12572 (19) | −0.36423 (11) | 0.0383 (3) | |
| C6 | 0.7815 (2) | −0.1071 (2) | −0.27117 (12) | 0.0415 (4) | |
| H6 | 0.8876 | −0.1252 | −0.2463 | 0.050* | |
| C7 | 0.5995 (2) | −0.0614 (2) | −0.21525 (11) | 0.0368 (3) | |
| H7 | 0.5836 | −0.0493 | −0.1525 | 0.044* | |
| C8 | 0.9951 (3) | −0.1689 (2) | −0.42235 (13) | 0.0507 (4) | |
| C9 | −0.1333 (2) | −0.28196 (18) | −0.05414 (10) | 0.0323 (3) | |
| H9 | −0.2528 | −0.2183 | −0.0253 | 0.039* | |
| C10 | −0.1218 (2) | −0.4269 (2) | −0.09346 (12) | 0.0379 (3) | |
| H10 | −0.2314 | −0.4600 | −0.0909 | 0.045* | |
| C11 | 0.0555 (2) | −0.52178 (18) | −0.13656 (11) | 0.0386 (3) | |
| H11 | 0.0669 | −0.6187 | −0.1644 | 0.046* | |
| C12 | 0.2158 (2) | −0.47000 (17) | −0.13758 (10) | 0.0317 (3) | |
| C13 | 0.1916 (2) | −0.32445 (17) | −0.09573 (10) | 0.0302 (3) | |
| H13 | 0.2994 | −0.2907 | −0.0952 | 0.036* | |
| C14 | 0.4178 (2) | −0.56899 (17) | −0.17441 (11) | 0.0354 (3) | |
| C15 | 0.3800 (3) | −0.5002 (2) | −0.33283 (12) | 0.0488 (4) | |
| H15A | 0.4514 | −0.4299 | −0.3693 | 0.059* | |
| H15B | 0.2577 | −0.4329 | −0.3008 | 0.059* | |
| C16 | 0.3474 (3) | −0.6144 (3) | −0.39581 (16) | 0.0663 (6) | |
| H16A | 0.2720 | −0.5537 | −0.4359 | 0.099* | |
| H16B | 0.2815 | −0.6874 | −0.3600 | 0.099* | |
| H16C | 0.4680 | −0.6748 | −0.4317 | 0.099* | |
| C17 | 0.6830 (3) | −0.6752 (2) | −0.30132 (13) | 0.0481 (4) | |
| H17A | 0.6893 | −0.7410 | −0.3527 | 0.058* | |
| H17B | 0.7267 | −0.7473 | −0.2542 | 0.058* | |
| C18 | 0.8137 (4) | −0.5660 (4) | −0.3324 (2) | 0.0831 (8) | |
| H18A | 0.9426 | −0.6304 | −0.3527 | 0.125* | |
| H18B | 0.8053 | −0.4984 | −0.2823 | 0.125* | |
| H18C | 0.7766 | −0.4997 | −0.3821 | 0.125* |
| Zn1 | 0.02409 (12) | 0.02632 (12) | 0.02797 (13) | −0.00158 (8) | −0.00370 (8) | −0.00585 (8) |
| O1 | 0.0317 (6) | 0.0954 (11) | 0.0390 (7) | −0.0015 (6) | −0.0080 (5) | 0.0024 (7) |
| O2 | 0.0289 (5) | 0.0415 (6) | 0.0297 (5) | −0.0098 (4) | −0.0014 (4) | −0.0061 (4) |
| O3 | 0.0501 (7) | 0.0621 (8) | 0.0419 (7) | 0.0212 (6) | −0.0165 (6) | −0.0093 (6) |
| O4 | 0.0310 (6) | 0.0488 (7) | 0.0375 (6) | 0.0048 (5) | −0.0113 (5) | −0.0020 (5) |
| N1 | 0.0492 (10) | 0.0958 (16) | 0.0549 (11) | 0.0045 (10) | 0.0111 (9) | −0.0003 (10) |
| N2 | 0.0268 (6) | 0.0263 (5) | 0.0297 (6) | −0.0019 (4) | −0.0049 (5) | −0.0032 (4) |
| N3 | 0.0392 (7) | 0.0349 (7) | 0.0353 (7) | 0.0061 (5) | −0.0050 (6) | −0.0021 (5) |
| C1 | 0.0295 (7) | 0.0314 (7) | 0.0343 (7) | −0.0074 (5) | −0.0040 (6) | −0.0017 (6) |
| C2 | 0.0314 (7) | 0.0303 (7) | 0.0284 (7) | −0.0094 (5) | −0.0033 (6) | −0.0001 (5) |
| C3 | 0.0372 (8) | 0.0564 (10) | 0.0321 (8) | −0.0091 (7) | −0.0094 (6) | −0.0015 (7) |
| C4 | 0.0471 (10) | 0.0597 (11) | 0.0266 (7) | −0.0070 (8) | −0.0034 (7) | −0.0035 (7) |
| C5 | 0.0343 (8) | 0.0374 (8) | 0.0349 (8) | −0.0048 (6) | 0.0025 (6) | −0.0014 (6) |
| C6 | 0.0318 (8) | 0.0527 (10) | 0.0379 (8) | −0.0086 (7) | −0.0059 (6) | −0.0035 (7) |
| C7 | 0.0334 (8) | 0.0469 (9) | 0.0287 (7) | −0.0099 (6) | −0.0040 (6) | −0.0046 (6) |
| C8 | 0.0421 (10) | 0.0553 (11) | 0.0406 (9) | −0.0013 (8) | 0.0036 (8) | 0.0016 (8) |
| C9 | 0.0281 (7) | 0.0340 (7) | 0.0323 (7) | −0.0042 (5) | −0.0067 (6) | −0.0002 (6) |
| C10 | 0.0364 (8) | 0.0381 (8) | 0.0436 (9) | −0.0124 (6) | −0.0148 (7) | 0.0002 (7) |
| C11 | 0.0466 (9) | 0.0285 (7) | 0.0422 (8) | −0.0065 (6) | −0.0158 (7) | −0.0061 (6) |
| C12 | 0.0349 (7) | 0.0258 (6) | 0.0296 (7) | 0.0007 (5) | −0.0077 (6) | −0.0015 (5) |
| C13 | 0.0276 (7) | 0.0275 (6) | 0.0323 (7) | −0.0032 (5) | −0.0052 (5) | −0.0024 (5) |
| C14 | 0.0373 (8) | 0.0257 (6) | 0.0367 (8) | 0.0032 (6) | −0.0080 (6) | −0.0054 (6) |
| C15 | 0.0511 (10) | 0.0477 (10) | 0.0367 (9) | 0.0030 (8) | −0.0089 (8) | 0.0050 (7) |
| C16 | 0.0596 (13) | 0.0810 (16) | 0.0555 (12) | −0.0073 (11) | −0.0190 (10) | −0.0058 (11) |
| C17 | 0.0395 (9) | 0.0476 (9) | 0.0434 (9) | 0.0054 (7) | −0.0015 (7) | −0.0057 (8) |
| C18 | 0.0576 (14) | 0.099 (2) | 0.093 (2) | −0.0287 (14) | −0.0102 (13) | 0.0008 (16) |
| Zn1—O2 | 2.0842 (10) | C6—H6 | 0.9300 |
| Zn1—O2i | 2.0842 (10) | C7—C6 | 1.384 (2) |
| Zn1—O4 | 2.1503 (11) | C7—H7 | 0.9300 |
| Zn1—O4i | 2.1503 (11) | C8—N1 | 1.135 (3) |
| Zn1—N2 | 2.1501 (11) | C9—C10 | 1.385 (2) |
| Zn1—N2i | 2.1501 (11) | C9—H9 | 0.9300 |
| O1—C1 | 1.2436 (19) | C10—H10 | 0.9300 |
| O2—C1 | 1.2584 (18) | C11—C10 | 1.383 (2) |
| O3—C14 | 1.231 (2) | C11—H11 | 0.9300 |
| O4—H41 | 0.83 (2) | C12—C11 | 1.385 (2) |
| O4—H42 | 0.82 (2) | C12—C14 | 1.509 (2) |
| N2—C9 | 1.3348 (19) | C13—C12 | 1.384 (2) |
| N2—C13 | 1.3389 (17) | C13—H13 | 0.9300 |
| N3—C14 | 1.334 (2) | C15—C16 | 1.510 (3) |
| N3—C15 | 1.472 (2) | C15—H15A | 0.9700 |
| N3—C17 | 1.467 (2) | C15—H15B | 0.9700 |
| C1—C2 | 1.513 (2) | C16—H16A | 0.9600 |
| C2—C3 | 1.389 (2) | C16—H16B | 0.9600 |
| C2—C7 | 1.386 (2) | C16—H16C | 0.9600 |
| C3—C4 | 1.380 (2) | C17—C18 | 1.508 (3) |
| C3—H3 | 0.9300 | C17—H17A | 0.9700 |
| C4—H4 | 0.9300 | C17—H17B | 0.9700 |
| C5—C4 | 1.393 (2) | C18—H18A | 0.9600 |
| C5—C6 | 1.382 (2) | C18—H18B | 0.9600 |
| C5—C8 | 1.446 (2) | C18—H18C | 0.9600 |
| O2—Zn1—O2i | 180.00 (7) | C6—C7—H7 | 119.7 |
| O2—Zn1—O4 | 89.94 (5) | N1—C8—C5 | 178.4 (2) |
| O2i—Zn1—O4 | 90.06 (5) | N2—C9—C10 | 122.61 (14) |
| O2—Zn1—O4i | 90.06 (5) | N2—C9—H9 | 118.7 |
| O2i—Zn1—O4i | 89.94 (5) | C10—C9—H9 | 118.7 |
| O2—Zn1—N2 | 88.48 (4) | C9—C10—H10 | 120.6 |
| O2i—Zn1—N2 | 91.52 (4) | C11—C10—C9 | 118.88 (14) |
| O2—Zn1—N2i | 91.52 (4) | C11—C10—H10 | 120.6 |
| O2i—Zn1—N2i | 88.48 (4) | C10—C11—C12 | 118.92 (14) |
| O4i—Zn1—O4 | 180.00 (10) | C10—C11—H11 | 120.5 |
| N2—Zn1—O4 | 92.36 (5) | C12—C11—H11 | 120.5 |
| N2i—Zn1—O4 | 87.64 (5) | C11—C12—C14 | 124.06 (13) |
| N2—Zn1—O4i | 87.64 (5) | C13—C12—C11 | 118.44 (13) |
| N2i—Zn1—O4i | 92.36 (5) | C13—C12—C14 | 117.28 (13) |
| N2i—Zn1—N2 | 180.00 (6) | N2—C13—C12 | 122.99 (13) |
| C1—O2—Zn1 | 127.55 (9) | N2—C13—H13 | 118.5 |
| Zn1—O4—H41 | 101.6 (16) | C12—C13—H13 | 118.5 |
| Zn1—O4—H42 | 135.9 (16) | O3—C14—N3 | 123.94 (14) |
| H41—O4—H42 | 106 (2) | O3—C14—C12 | 117.46 (14) |
| C9—N2—Zn1 | 122.37 (9) | N3—C14—C12 | 118.58 (13) |
| C9—N2—C13 | 118.12 (12) | N3—C15—C16 | 112.80 (17) |
| C13—N2—Zn1 | 119.50 (9) | N3—C15—H15A | 109.0 |
| C14—N3—C15 | 124.36 (14) | N3—C15—H15B | 109.0 |
| C14—N3—C17 | 118.81 (14) | C16—C15—H15A | 109.0 |
| C17—N3—C15 | 116.34 (14) | C16—C15—H15B | 109.0 |
| O1—C1—O2 | 126.05 (14) | H15A—C15—H15B | 107.8 |
| O1—C1—C2 | 117.65 (14) | C15—C16—H16A | 109.5 |
| O2—C1—C2 | 116.30 (13) | C15—C16—H16B | 109.5 |
| C3—C2—C1 | 120.47 (14) | C15—C16—H16C | 109.5 |
| C7—C2—C3 | 119.42 (14) | H16A—C16—H16B | 109.5 |
| C7—C2—C1 | 120.10 (13) | H16A—C16—H16C | 109.5 |
| C2—C3—H3 | 119.8 | H16B—C16—H16C | 109.5 |
| C4—C3—C2 | 120.43 (15) | N3—C17—C18 | 112.50 (18) |
| C4—C3—H3 | 119.8 | N3—C17—H17A | 109.1 |
| C3—C4—C5 | 119.49 (15) | N3—C17—H17B | 109.1 |
| C3—C4—H4 | 120.3 | C18—C17—H17A | 109.1 |
| C5—C4—H4 | 120.3 | C18—C17—H17B | 109.1 |
| C4—C5—C8 | 120.56 (16) | H17A—C17—H17B | 107.8 |
| C6—C5—C4 | 120.54 (15) | C17—C18—H18A | 109.5 |
| C6—C5—C8 | 118.90 (16) | C17—C18—H18B | 109.5 |
| C5—C6—C7 | 119.41 (15) | C17—C18—H18C | 109.5 |
| C5—C6—H6 | 120.3 | H18A—C18—H18B | 109.5 |
| C7—C6—H6 | 120.3 | H18A—C18—H18C | 109.5 |
| C2—C7—H7 | 119.7 | H18B—C18—H18C | 109.5 |
| C6—C7—C2 | 120.68 (15) | ||
| O4—Zn1—O2—C1 | 153.35 (13) | C15—N3—C17—C18 | 73.3 (2) |
| O4i—Zn1—O2—C1 | −26.65 (13) | O1—C1—C2—C3 | −8.8 (2) |
| N2—Zn1—O2—C1 | 60.99 (12) | O1—C1—C2—C7 | 170.29 (16) |
| N2i—Zn1—O2—C1 | −119.01 (12) | O2—C1—C2—C3 | 171.11 (15) |
| O2—Zn1—N2—C9 | −144.71 (12) | O2—C1—C2—C7 | −9.8 (2) |
| O2i—Zn1—N2—C9 | 35.29 (12) | C1—C2—C3—C4 | 177.77 (16) |
| O2—Zn1—N2—C13 | 34.08 (11) | C7—C2—C3—C4 | −1.4 (3) |
| O2i—Zn1—N2—C13 | −145.92 (11) | C1—C2—C7—C6 | −177.60 (15) |
| O4—Zn1—N2—C9 | 125.41 (12) | C3—C2—C7—C6 | 1.5 (2) |
| O4i—Zn1—N2—C9 | −54.59 (12) | C2—C3—C4—C5 | 0.0 (3) |
| O4—Zn1—N2—C13 | −55.80 (11) | C6—C5—C4—C3 | 1.2 (3) |
| O4i—Zn1—N2—C13 | 124.20 (11) | C8—C5—C4—C3 | −178.01 (18) |
| Zn1—O2—C1—O1 | 25.4 (2) | C4—C5—C6—C7 | −1.0 (3) |
| Zn1—O2—C1—C2 | −154.52 (10) | C8—C5—C6—C7 | 178.20 (17) |
| Zn1—N2—C9—C10 | 177.24 (12) | C2—C7—C6—C5 | −0.4 (3) |
| C13—N2—C9—C10 | −1.6 (2) | N2—C9—C10—C11 | −0.1 (2) |
| Zn1—N2—C13—C12 | −176.49 (11) | C12—C11—C10—C9 | 1.1 (2) |
| C9—N2—C13—C12 | 2.3 (2) | C13—C12—C11—C10 | −0.4 (2) |
| C15—N3—C14—O3 | −172.38 (18) | C14—C12—C11—C10 | 174.11 (15) |
| C15—N3—C14—C12 | 5.8 (2) | C11—C12—C14—O3 | −107.28 (19) |
| C17—N3—C14—O3 | −0.7 (3) | C11—C12—C14—N3 | 74.5 (2) |
| C17—N3—C14—C12 | 177.46 (14) | C13—C12—C14—O3 | 67.3 (2) |
| C14—N3—C15—C16 | −121.41 (19) | C13—C12—C14—N3 | −111.00 (17) |
| C17—N3—C15—C16 | 66.7 (2) | N2—C13—C12—C11 | −1.4 (2) |
| C14—N3—C17—C18 | −99.1 (2) | N2—C13—C12—C14 | −176.26 (13) |
| H··· | ||||
| O4—H41···O1i | 0.83 (2) | 1.84 (2) | 2.6419 (19) | 161 (2) |
| O4—H42···O3ii | 0.82 (2) | 2.03 (2) | 2.827 (2) | 163 (2) |