Literature DB >> 27742731

Cell-Free Synthetic Biology: Engineering Beyond the Cell.

Jessica G Perez1,2, Jessica C Stark1,2, Michael C Jewett1,2,3,4.   

Abstract

Cell-free protein synthesis (CFPS) technologies have enabled inexpensive and rapid recombinant protein expression. Numerous highly active CFPS platforms are now available and have recently been used for synthetic biology applications. In this review, we focus on the ability of CFPS to expand our understanding of biological systems and its applications in the synthetic biology field. First, we outline a variety of CFPS platforms that provide alternative and complementary methods for expressing proteins from different organisms, compared with in vivo approaches. Next, we review the types of proteins, protein complexes, and protein modifications that have been achieved using CFPS systems. Finally, we introduce recent work on genetic networks in cell-free systems and the use of cell-free systems for rapid prototyping of in vivo networks. Given the flexibility of cell-free systems, CFPS holds promise to be a powerful tool for synthetic biology as well as a protein production technology in years to come.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

Mesh:

Substances:

Year:  2016        PMID: 27742731      PMCID: PMC5131772          DOI: 10.1101/cshperspect.a023853

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  186 in total

1.  Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation.

Authors:  Douglas W Selinger; Rini Mukherjee Saxena; Kevin J Cheung; George M Church; Carsten Rosenow
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

2.  Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system.

Authors:  Zachary Z Sun; Enoch Yeung; Clarmyra A Hayes; Vincent Noireaux; Richard M Murray
Journal:  ACS Synth Biol       Date:  2013-12-04       Impact factor: 5.110

3.  Optimization of a miniaturized fluid array device for cell-free protein synthesis.

Authors:  Kirsten Jackson; Shouguang Jin; Z Hugh Fan
Journal:  Biotechnol Bioeng       Date:  2015-07-14       Impact factor: 4.530

4.  Flexizyme-mediated genetic reprogramming as a tool for noncanonical peptide synthesis and drug discovery.

Authors:  Toby Passioura; Hiroaki Suga
Journal:  Chemistry       Date:  2013-03-20       Impact factor: 5.236

5.  Using E. coli-based cell-free protein synthesis to evaluate the kinetic performance of an orthogonal tRNA and aminoacyl-tRNA synthetase pair.

Authors:  Cem Albayrak; James R Swartz
Journal:  Biochem Biophys Res Commun       Date:  2013-01-03       Impact factor: 3.575

6.  Simultaneous expression and maturation of the iron-sulfur protein ferredoxin in a cell-free system.

Authors:  Marcus E Boyer; Chia-Wei Wang; James R Swartz
Journal:  Biotechnol Bioeng       Date:  2006-05-05       Impact factor: 4.530

7.  Production of secretory and extracellular N-linked glycoproteins in Escherichia coli.

Authors:  Adam C Fisher; Charles H Haitjema; Cassandra Guarino; Eda Çelik; Christine E Endicott; Craig A Reading; Judith H Merritt; A Celeste Ptak; Sheng Zhang; Matthew P DeLisa
Journal:  Appl Environ Microbiol       Date:  2010-12-03       Impact factor: 4.792

8.  Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system.

Authors:  Filippo Caschera; Vincent Noireaux
Journal:  Biochimie       Date:  2013-12-08       Impact factor: 4.079

9.  Species-independent translational leaders facilitate cell-free expression.

Authors:  Sergei Mureev; Oleksiy Kovtun; Uyen T T Nguyen; Kirill Alexandrov
Journal:  Nat Biotechnol       Date:  2009-08-02       Impact factor: 54.908

10.  RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Authors:  David B F Johnson; Jianfeng Xu; Zhouxin Shen; Jeffrey K Takimoto; Matthew D Schultz; Robert J Schmitz; Zheng Xiang; Joseph R Ecker; Steven P Briggs; Lei Wang
Journal:  Nat Chem Biol       Date:  2011-09-18       Impact factor: 15.040

View more
  28 in total

1.  Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems.

Authors:  Ryan Marshall; Colin S Maxwell; Scott P Collins; Chase L Beisel; Vincent Noireaux
Journal:  Biotechnol Bioeng       Date:  2017-05-23       Impact factor: 4.530

2.  Setting Up an Automated Biomanufacturing Laboratory.

Authors:  Marilene Pavan
Journal:  Methods Mol Biol       Date:  2021

3.  Multicomponent Microscale Biosynthesis of Unnatural Cyanobacterial Indole Alkaloids.

Authors:  Yogan Khatri; Robert M Hohlman; Johnny Mendoza; Shasha Li; Andrew N Lowell; Haruichi Asahara; David H Sherman
Journal:  ACS Synth Biol       Date:  2020-05-07       Impact factor: 5.110

4.  In Vitro Reconstitution Platforms of Mammalian Cell-Free Expressed Membrane Proteins.

Authors:  Hossein Moghimianavval; Yen-Yu Hsu; Alessandro Groaz; Allen P Liu
Journal:  Methods Mol Biol       Date:  2022

5.  Metabolic Profiling of Escherichia coli-based Cell-Free Expression Systems for Process Optimization.

Authors:  April M Miguez; Monica P McNerney; Mark P Styczynski
Journal:  Ind Eng Chem Res       Date:  2019-09-13       Impact factor: 3.720

6.  Extender Unit Promiscuity and Orthogonal Protein Interactions of an Aminomalonyl-ACP Utilizing Trans-Acyltransferase from Zwittermicin Biosynthesis.

Authors:  Samantha M Carpenter; Gavin J Williams
Journal:  ACS Chem Biol       Date:  2018-11-28       Impact factor: 5.100

7.  Cell-Free Biosynthesis to Evaluate Lasso Peptide Formation and Enzyme-Substrate Tolerance.

Authors:  Yuanyuan Si; Ashley M Kretsch; Laura M Daigh; Mark J Burk; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2021-04-06       Impact factor: 15.419

Review 8.  Microbially derived biosensors for diagnosis, monitoring and epidemiology.

Authors:  Hung-Ju Chang; Peter L Voyvodic; Ana Zúñiga; Jérôme Bonnet
Journal:  Microb Biotechnol       Date:  2017-08-03       Impact factor: 5.813

9.  Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids.

Authors:  Rey W Martin; Benjamin J Des Soye; Yong-Chan Kwon; Jennifer Kay; Roderick G Davis; Paul M Thomas; Natalia I Majewska; Cindy X Chen; Ryan D Marcum; Mary Grace Weiss; Ashleigh E Stoddart; Miriam Amiram; Arnaz K Ranji Charna; Jaymin R Patel; Farren J Isaacs; Neil L Kelleher; Seok Hoon Hong; Michael C Jewett
Journal:  Nat Commun       Date:  2018-03-23       Impact factor: 14.919

Review 10.  Bacterial cell-free expression technology to in vitro systems engineering and optimization.

Authors:  Filippo Caschera
Journal:  Synth Syst Biotechnol       Date:  2017-08-07
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.