Literature DB >> 27734114

Development of Soil Bacterial Communities in Volcanic Ash Microcosms in a Range of Climates.

Dorsaf Kerfahi1, Ryunosuke Tateno2, Koichi Takahashi3, HyunJun Cho1, Hyoki Kim4, Jonathan M Adams5.   

Abstract

There is considerable interest in understanding the processes of microbial development in volcanic ash. We tested the predictions that there would be (1) a distinctive bacterial community associated with soil development on volcanic ash, including groups previously implicated in weathering studies; (2) a slower increase in bacterial abundance and soil C and N accumulation in cooler climates; and (3) a distinct communities developing on the same substrate in different climates. We set up an experiment, taking freshly fallen, sterilized volcanic ash from Sakurajima volcano, Japan. Pots of ash were positioned in multiple locations, with mean annual temperature (MAT) ranging from 18.6 to -3 °C. Within 12 months, bacteria were detectable by qPCR in all pots. By 24 months, bacterial copy numbers had increased by 10-100 times relative to a year before. C and N content approximately doubled between 12 and 24 months. HiSeq and MiSeq sequencing of the 16S rRNA gene revealed a distinctive bacterial community, different from developed vegetated soils in the same areas, for example in containing an abundance of unclassified bacterial groups. Community composition also differed between the ash pots at different sites, while showing no pattern in relation to MAT. Contrary to our predictions, the bacterial abundance did not show any relation to MAT. It also did not correlate to pH or N, and only C was statistically significant. It appears that bacterial community development on volcanic ash can be a rapid process not closely sensitive to temperature, involving distinct communities from developed soils.

Entities:  

Keywords:  16S rRNA gene; Bacterial community; Community composition; Volcanic ash; Weathering bacteria

Mesh:

Substances:

Year:  2016        PMID: 27734114     DOI: 10.1007/s00248-016-0873-y

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  27 in total

1.  Molecular analysis of carbon monoxide-oxidizing bacteria associated with recent Hawaiian volcanic deposits.

Authors:  Kari E Dunfield; Gary M King
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

2.  A general model for effects of temperature on ectotherm ontogenetic growth and development.

Authors:  Wenyun Zuo; Melanie E Moses; Geoffrey B West; Chen Hou; James H Brown
Journal:  Proc Biol Sci       Date:  2011-11-30       Impact factor: 5.349

3.  pH dominates variation in tropical soil archaeal diversity and community structure.

Authors:  Binu M Tripathi; Mincheol Kim; Ang Lai-Hoe; Nor A A Shukor; Raha A Rahim; Rusea Go; Jonathan M Adams
Journal:  FEMS Microbiol Ecol       Date:  2013-07-04       Impact factor: 4.194

Review 4.  Mineral weathering by bacteria: ecology, actors and mechanisms.

Authors:  Stéphane Uroz; Christophe Calvaruso; Marie-Pierre Turpault; Pascale Frey-Klett
Journal:  Trends Microbiol       Date:  2009-08-05       Impact factor: 17.079

5.  Soil microbial community responses to multiple experimental climate change drivers.

Authors:  Hector F Castro; Aimée T Classen; Emily E Austin; Richard J Norby; Christopher W Schadt
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Nitrogenase activity (acetylene reduction) of an iron-oxidizing leptospirillum strain cultured as a pioneer microbe from a recent volcanic deposit on miyake-jima, Japan.

Authors:  Yoshinori Sato; Ken Hosokawa; Reiko Fujimura; Tomoyasu Nishizawa; Takashi Kamijo; Hiroyuki Ohta
Journal:  Microbes Environ       Date:  2009       Impact factor: 2.912

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering.

Authors:  Susan M Huse; David Mark Welch; Hilary G Morrison; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2010-03-11       Impact factor: 5.491

9.  Ammonia oxidizers are pioneer microorganisms in the colonization of new acidic volcanic soils from South of Chile.

Authors:  Marcela Hernández; Marc G Dumont; Marcela Calabi; Daniel Basualto; Ralf Conrad
Journal:  Environ Microbiol Rep       Date:  2013-10-21       Impact factor: 3.541

10.  Analysis of early bacterial communities on volcanic deposits on the island of Miyake (Miyake-jima), Japan: a 6-year study at a fixed site.

Authors:  Reiko Fujimura; Yoshinori Sato; Tomoyasu Nishizawa; Kenji Nanba; Kenshiro Oshima; Masahira Hattori; Takashi Kamijo; Hiroyuki Ohta
Journal:  Microbes Environ       Date:  2011-11-10       Impact factor: 2.912

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  3 in total

1.  Biodeterioration of Pompeian mural paintings: fungal colonization favoured by the presence of volcanic material residues.

Authors:  Marco Veneranda; Nagore Prieto-Taboada; Silvia Fdez-Ortiz de Vallejuelo; Maite Maguregui; Hector Morillas; Iker Marcaida; Kepa Castro; Juan Manuel Madariaga; Massimo Osanna
Journal:  Environ Sci Pollut Res Int       Date:  2017-07-05       Impact factor: 4.223

2.  Metagenomic analysis reveals rapid development of soil biota on fresh volcanic ash.

Authors:  Hokyung Song; Dorsaf Kerfahi; Koichi Takahashi; Sophie L Nixon; Binu M Tripathi; Hyoki Kim; Ryunosuke Tateno; Jonathan Adams
Journal:  Sci Rep       Date:  2020-12-08       Impact factor: 4.379

3.  Bacterial Community with Plant Growth-Promoting Potential Associated to Pioneer Plants from an Active Mexican Volcanic Complex.

Authors:  Clara Ivette Rincón-Molina; Esperanza Martínez-Romero; José Luis Aguirre-Noyola; Luis Alberto Manzano-Gómez; Adalberto Zenteno-Rojas; Marco Antonio Rogel; Francisco Alexander Rincón-Molina; Víctor Manuel Ruíz-Valdiviezo; Reiner Rincón-Rosales
Journal:  Microorganisms       Date:  2022-08-04
  3 in total

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