Literature DB >> 27731977

Negative Charge Neutralization in the Loops and Turns of Outer Membrane Phospholipase A Impacts Folding Hysteresis at Neutral pH.

Sarah K McDonald1, Karen G Fleming1.   

Abstract

Hysteresis in equilibrium protein folding titrations is an experimental barrier that must be overcome to extract meaningful thermodynamic quantities. Traditional approaches to solving this problem involve testing a spectrum of solution conditions to find ones that achieve path independence. Through this procedure, a specific pH of 3.8 was required to achieve path independence for the water-to-bilayer equilibrium folding of outer membrane protein OmpLA. We hypothesized that the neutralization of negatively charged side chains (Asp and Glu) at pH 3.8 could be the physical basis for path-independent folding at this pH. To test this idea, we engineered variants of OmpLA with AspAsn and GluGln mutations to neutralize the negative charges within various regions of the protein and tested for reversible folding at neutral pH. Although not fully resolved, our results show that these mutations in the periplasmic turns and extracellular loops are responsible for 60% of the hysteresis in wild-type folding. Overall, our study suggests that negative charges impact the folding hysteresis in outer membrane proteins and their neutralization may aid in protein engineering applications.

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Year:  2016        PMID: 27731977      PMCID: PMC5823272          DOI: 10.1021/acs.biochem.6b00652

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  The Role of a Destabilized Membrane for OMP Insertion.

Authors:  Ashlee M Plummer; Dennis Gessmann; Karen G Fleming
Journal:  Methods Mol Biol       Date:  2015

Review 2.  The process of folding proteins into membranes: challenges and progress.

Authors:  Ann Marie Stanley; Karen G Fleming
Journal:  Arch Biochem Biophys       Date:  2007-10-22       Impact factor: 4.013

3.  Protein folding and stability using denaturants.

Authors:  Timothy O Street; Naomi Courtemanche; Doug Barrick
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

4.  Beta-barrel proteins that reside in the Escherichia coli outer membrane in vivo demonstrate varied folding behavior in vitro.

Authors:  Nancy K Burgess; Thuy P Dao; Ann Marie Stanley; Karen G Fleming
Journal:  J Biol Chem       Date:  2008-07-19       Impact factor: 5.157

5.  Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.

Authors:  C Preston Moon; Karen G Fleming
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

6.  Energetically significant networks of coupled interactions within an unfolded protein.

Authors:  Jae-Hyun Cho; Wenli Meng; Satoshi Sato; Eun Young Kim; Hermann Schindelin; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-06       Impact factor: 11.205

Review 7.  Energetics of membrane protein folding.

Authors:  Karen G Fleming
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

8.  Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins.

Authors:  Benjamin T Andrews; Dominique T Capraro; Joanna I Sulkowska; José N Onuchic; Patricia A Jennings
Journal:  J Phys Chem Lett       Date:  2012-12-18       Impact factor: 6.475

9.  Role of aromatic side chains in the folding and thermodynamic stability of integral membrane proteins.

Authors:  Heedeok Hong; Sangho Park; Ricardo H Flores Jiménez; Dennis Rinehart; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2007-06-12       Impact factor: 15.419

10.  Aromatic Side Chain Water-to-Lipid Transfer Free Energies Show a Depth Dependence across the Membrane Normal.

Authors:  Sarah K McDonald; Karen G Fleming
Journal:  J Am Chem Soc       Date:  2016-06-15       Impact factor: 15.419

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  3 in total

Review 1.  Transmembrane β-barrels: Evolution, folding and energetics.

Authors:  Deepti Chaturvedi; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-09-22       Impact factor: 3.747

2.  Energetics of side-chain partitioning of β-signal residues in unassisted folding of a transmembrane β-barrel protein.

Authors:  Bharat Ramasubramanian Iyer; Punit Zadafiya; Pallavi Vijay Vetal; Radhakrishnan Mahalakshmi
Journal:  J Biol Chem       Date:  2017-06-07       Impact factor: 5.157

3.  Reversible folding energetics of Yersinia Ail barrel reveals a hyperfluorescent intermediate.

Authors:  Ankit Gupta; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2019-10-28       Impact factor: 3.747

  3 in total

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