Literature DB >> 27729526

Efficient CRISPR-mediated mutagenesis in primary immune cells using CrispRGold and a C57BL/6 Cas9 transgenic mouse line.

Van Trung Chu1, Robin Graf1, Tristan Wirtz2, Timm Weber2, Jeremy Favret2,3, Xun Li2, Kerstin Petsch2, Ngoc Tung Tran2, Michael H Sieweke2,3,4,5, Claudia Berek6, Ralf Kühn2,7, Klaus Rajewsky1.   

Abstract

Applying clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR associated protein 9 (Cas9)-mediated mutagenesis to primary mouse immune cells, we used high-fidelity single guide RNAs (sgRNAs) designed with an sgRNA design tool (CrispRGold) to target genes in primary B cells, T cells, and macrophages isolated from a Cas9 transgenic mouse line. Using this system, we achieved an average knockout efficiency of 80% in B cells. On this basis, we established a robust small-scale CRISPR-mediated screen in these cells and identified genes essential for B-cell activation and plasma cell differentiation. This screening system does not require deep sequencing and may serve as a precedent for the application of CRISPR/Cas9 to primary mouse cells.

Entities:  

Keywords:  B cells; CRISPR/Cas9; knockout efficiency; primary cells; sgRNA design

Mesh:

Year:  2016        PMID: 27729526      PMCID: PMC5098665          DOI: 10.1073/pnas.1613884113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Plasma cell differentiation requires the transcription factor XBP-1.

Authors:  A M Reimold; N N Iwakoshi; J Manis; P Vallabhajosyula; E Szomolanyi-Tsuda; E M Gravallese; D Friend; M J Grusby; F Alt; L H Glimcher
Journal:  Nature       Date:  2001-07-19       Impact factor: 49.962

2.  Genome-scale CRISPR-Cas9 knockout screening in human cells.

Authors:  Ophir Shalem; Neville E Sanjana; Ella Hartenian; Xi Shi; David A Scott; Tarjei Mikkelson; Dirk Heckl; Benjamin L Ebert; David E Root; John G Doench; Feng Zhang
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

3.  Genetic screens in human cells using the CRISPR-Cas9 system.

Authors:  Tim Wang; Jenny J Wei; David M Sabatini; Eric S Lander
Journal:  Science       Date:  2013-12-12       Impact factor: 47.728

4.  An inducible lentiviral guide RNA platform enables the identification of tumor-essential genes and tumor-promoting mutations in vivo.

Authors:  Brandon J Aubrey; Gemma L Kelly; Andrew J Kueh; Margs S Brennan; Liam O'Connor; Liz Milla; Stephen Wilcox; Lin Tai; Andreas Strasser; Marco J Herold
Journal:  Cell Rep       Date:  2015-02-26       Impact factor: 9.423

5.  B-cell-specific coactivator OBF-1/OCA-B/Bob1 required for immune response and germinal centre formation.

Authors:  D B Schubart; A Rolink; M H Kosco-Vilbois; F Botteri; P Matthias
Journal:  Nature       Date:  1996-10-10       Impact factor: 49.962

6.  Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library.

Authors:  Hiroko Koike-Yusa; Yilong Li; E-Pien Tan; Martin Del Castillo Velasco-Herrera; Kosuke Yusa
Journal:  Nat Biotechnol       Date:  2013-12-23       Impact factor: 54.908

7.  ViennaRNA Package 2.0.

Authors:  Ronny Lorenz; Stephan H Bernhart; Christian Höner Zu Siederdissen; Hakim Tafer; Christoph Flamm; Peter F Stadler; Ivo L Hofacker
Journal:  Algorithms Mol Biol       Date:  2011-11-24       Impact factor: 1.405

8.  Differential requirement for OBF-1 during antibody-secreting cell differentiation.

Authors:  Lynn M Corcoran; Jhagvaral Hasbold; Wendy Dietrich; Edwin Hawkins; Axel Kallies; Stephen L Nutt; David M Tarlinton; Patrick Matthias; Philip D Hodgkin
Journal:  J Exp Med       Date:  2005-05-02       Impact factor: 14.307

9.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

Review 10.  Resources for the design of CRISPR gene editing experiments.

Authors:  Daniel B Graham; David E Root
Journal:  Genome Biol       Date:  2015-11-27       Impact factor: 13.583

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  47 in total

1.  Good guide, bad guide: spacer sequence-dependent cleavage efficiency of Cas12a.

Authors:  Sjoerd C A Creutzburg; Wen Y Wu; Prarthana Mohanraju; Thomas Swartjes; Ferhat Alkan; Jan Gorodkin; Raymond H J Staals; John van der Oost
Journal:  Nucleic Acids Res       Date:  2020-04-06       Impact factor: 16.971

Review 2.  In vivo functional screening for systems-level integrative cancer genomics.

Authors:  Julia Weber; Christian J Braun; Dieter Saur; Roland Rad
Journal:  Nat Rev Cancer       Date:  2020-07-07       Impact factor: 60.716

Review 3.  The basics of CAR T design and challenges in immunotherapy of solid tumors - Ovarian cancer as a model.

Authors:  Xuequn Xu; Jin Qiu; Yi Sun
Journal:  Hum Vaccin Immunother       Date:  2017-03-08       Impact factor: 3.452

4.  B cells engineered to express pathogen-specific antibodies protect against infection.

Authors:  Howell F Moffett; Carson K Harms; Kristin S Fitzpatrick; Marti R Tooley; Jim Boonyaratanakornkit; Justin J Taylor
Journal:  Sci Immunol       Date:  2019-05-17

5.  SIRT1 regulates macrophage self-renewal.

Authors:  Francesco Imperatore; Julien Maurizio; Stephanie Vargas Aguilar; Clara J Busch; Jérémy Favret; Elisabeth Kowenz-Leutz; Wilfried Cathou; Rebecca Gentek; Pierre Perrin; Achim Leutz; Carole Berruyer; Michael H Sieweke
Journal:  EMBO J       Date:  2017-07-12       Impact factor: 11.598

6.  Efficient CRISPR/Cas9-Mediated Mutagenesis in Primary Murine T Lymphocytes.

Authors:  Bonnie Huang; Kristoffer Haurum Johansen; Pamela L Schwartzberg
Journal:  Curr Protoc Immunol       Date:  2018-10-12

Review 7.  Functional interrogation of non-coding DNA through CRISPR genome editing.

Authors:  Matthew C Canver; Daniel E Bauer; Stuart H Orkin
Journal:  Methods       Date:  2017-03-10       Impact factor: 3.608

8.  Genetic engineering in primary human B cells with CRISPR-Cas9 ribonucleoproteins.

Authors:  Chung-An M Wu; Theodore L Roth; Yuriy Baglaenko; Dario M Ferri; Patrick Brauer; Juan Carlos Zuniga-Pflucker; Kristina W Rosbe; Joan E Wither; Alexander Marson; Christopher D C Allen
Journal:  J Immunol Methods       Date:  2018-03-31       Impact factor: 2.303

9.  Lentiviral CRISPR/Cas9-Mediated Genome Editing for the Study of Hematopoietic Cells in Disease Models.

Authors:  Soichi Sano; Ying Wang; Megan A Evans; Yoshimitsu Yura; Miho Sano; Hayato Ogawa; Keita Horitani; Heather Doviak; Kenneth Walsh
Journal:  J Vis Exp       Date:  2019-10-03       Impact factor: 1.355

10.  Highly Efficient and Versatile Plasmid-Based Gene Editing in Primary T Cells.

Authors:  Mara Kornete; Romina Marone; Lukas T Jeker
Journal:  J Immunol       Date:  2018-02-14       Impact factor: 5.422

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