Literature DB >> 27729515

Cis-eQTLs regulate reduced LST1 gene and NCR3 gene expression and contribute to increased autoimmune disease risk.

Guiyou Liu1, Yang Hu1, Shuilin Jin2, Fang Zhang3, Qinghua Jiang4, Junwei Hao5.   

Abstract

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Year:  2016        PMID： 27729515      PMCID： PMC5081638          DOI： 10.1073/pnas.1614369113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  5 in total

1.  Expression quantitative trait loci regulate HNF4A and PTBP1 expression in human brains.

Authors:  Guiyou Liu; Xinjie Bao; Renzhi Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

2.  Conserved 33-kb haplotype in the MHC class III region regulates chronic arthritis.

Authors:  Anthony C Y Yau; Jonatan Tuncel; Sabrina Haag; Ulrika Norin; Miranda Houtman; Leonid Padyukov; Rikard Holmdahl
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-14       Impact factor: 11.205

3.  Brain expression genome-wide association study (eGWAS) identifies human disease-associated variants.

Authors:  Fanggeng Zou; High Seng Chai; Curtis S Younkin; Mariet Allen; Julia Crook; V Shane Pankratz; Minerva M Carrasquillo; Christopher N Rowley; Asha A Nair; Sumit Middha; Sooraj Maharjan; Thuy Nguyen; Li Ma; Kimberly G Malphrus; Ryan Palusak; Sarah Lincoln; Gina Bisceglio; Constantin Georgescu; Naomi Kouri; Christopher P Kolbert; Jin Jen; Jonathan L Haines; Richard Mayeux; Margaret A Pericak-Vance; Lindsay A Farrer; Gerard D Schellenberg; Ronald C Petersen; Neill R Graff-Radford; Dennis W Dickson; Steven G Younkin; Nilüfer Ertekin-Taner
Journal:  PLoS Genet       Date:  2012-06-07       Impact factor: 5.917

4.  Genetics of rheumatoid arthritis contributes to biology and drug discovery.

Authors:  Yukinori Okada; Di Wu; Gosia Trynka; Towfique Raj; Chikashi Terao; Katsunori Ikari; Yuta Kochi; Koichiro Ohmura; Akari Suzuki; Shinji Yoshida; Robert R Graham; Arun Manoharan; Ward Ortmann; Tushar Bhangale; Joshua C Denny; Robert J Carroll; Anne E Eyler; Jeffrey D Greenberg; Joel M Kremer; Dimitrios A Pappas; Lei Jiang; Jian Yin; Lingying Ye; Ding-Feng Su; Jian Yang; Gang Xie; Ed Keystone; Harm-Jan Westra; Tõnu Esko; Andres Metspalu; Xuezhong Zhou; Namrata Gupta; Daniel Mirel; Eli A Stahl; Dorothée Diogo; Jing Cui; Katherine Liao; Michael H Guo; Keiko Myouzen; Takahisa Kawaguchi; Marieke J H Coenen; Piet L C M van Riel; Mart A F J van de Laar; Henk-Jan Guchelaar; Tom W J Huizinga; Philippe Dieudé; Xavier Mariette; S Louis Bridges; Alexandra Zhernakova; Rene E M Toes; Paul P Tak; Corinne Miceli-Richard; So-Young Bang; Hye-Soon Lee; Javier Martin; Miguel A Gonzalez-Gay; Luis Rodriguez-Rodriguez; Solbritt Rantapää-Dahlqvist; Lisbeth Arlestig; Hyon K Choi; Yoichiro Kamatani; Pilar Galan; Mark Lathrop; Steve Eyre; John Bowes; Anne Barton; Niek de Vries; Larry W Moreland; Lindsey A Criswell; Elizabeth W Karlson; Atsuo Taniguchi; Ryo Yamada; Michiaki Kubo; Jun S Liu; Sang-Cheol Bae; Jane Worthington; Leonid Padyukov; Lars Klareskog; Peter K Gregersen; Soumya Raychaudhuri; Barbara E Stranger; Philip L De Jager; Lude Franke; Peter M Visscher; Matthew A Brown; Hisashi Yamanaka; Tsuneyo Mimori; Atsushi Takahashi; Huji Xu; Timothy W Behrens; Katherine A Siminovitch; Shigeki Momohara; Fumihiko Matsuda; Kazuhiko Yamamoto; Robert M Plenge
Journal:  Nature       Date:  2013-12-25       Impact factor: 49.962

5.  Integrative genomic deconvolution of rheumatoid arthritis GWAS loci into gene and cell type associations.

Authors:  Alice M Walsh; John W Whitaker; C Chris Huang; Yauheniya Cherkas; Sarah L Lamberth; Carrie Brodmerkel; Mark E Curran; Radu Dobrin
Journal:  Genome Biol       Date:  2016-04-30       Impact factor: 13.583
  5 in total
  12 in total

1.  Reply to Liu et al.: Translation of rat congenic data to humans on a conserved MHC-III haplotype associated with rheumatoid arthritis.

Authors:  Anthony C Y Yau; Miranda Houtman; Leonid Padyukov; Rikard Holmdahl
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

2.  Disease status affects the association between rs4813620 and the expression of Alzheimer's disease susceptibility gene TRIB3.

Authors:  Guiyou Liu; Shuilin Jin; Yang Hu; Qinghua Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-24       Impact factor: 11.205

3.  Rs4878104 contributes to Alzheimer's disease risk and regulates DAPK1 gene expression.

Authors:  Yang Hu; Liang Cheng; Ying Zhang; Weiyang Bai; Wenyang Zhou; Tao Wang; Zhifa Han; Jian Zong; Shuilin Jin; Jun Zhang; Qinghua Jiang; Guiyou Liu
Journal:  Neurol Sci       Date:  2017-04-20       Impact factor: 3.307

4.  Autoimmune disease variants regulate GSDMB gene expression in human immune cells and whole blood.

Authors:  Yang Hu; Shuilin Jin; Liang Cheng; Guiyou Liu; Qinghua Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-07       Impact factor: 11.205

5.  rs34331204 regulates TSPAN13 expression and contributes to Alzheimer's disease with sex differences.

Authors:  Yang Hu; Haihua Zhang; Bian Liu; Shan Gao; Tao Wang; Zhifa Han; Xunming Ji; Guiyou Liu
Journal:  Brain       Date:  2020-12-05       Impact factor: 15.255

6.  GLRB variants regulate nearby gene expression in human brain tissues.

Authors:  Qing-Jian Wu; Ming-Feng Yang; Pi-da Hao; Cheng-Jun Yan; Chun-Jing Du; Han-Xia Li; Ya-Jun Hou; Bao-Liang Sun; Shu-Yin Sun
Journal:  Sci Rep       Date:  2017-10-17       Impact factor: 4.379

7.  Finding associated variants in genome-wide association studies on multiple traits.

Authors:  Lisa Gai; Eleazar Eskin
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

8.  Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes.

Authors:  Dat Duong; Lisa Gai; Sagi Snir; Eun Yong Kang; Buhm Han; Jae Hoon Sul; Eleazar Eskin
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

9.  Genetic Variant rs755622 Regulates Expression of the Multiple Sclerosis Severity Modifier D-Dopachrome Tautomerase in a Sex-Specific Way.

Authors:  Zhijie Han; Jiaojiao Qu; Jiehong Zhao; Xiao Zou
Journal:  Biomed Res Int       Date:  2018-07-24       Impact factor: 3.411

Review 10.  Recent Advances in Predicting Protein S-Nitrosylation Sites.

Authors:  Qian Zhao; Jiaqi Ma; Fang Xie; Yu Wang; Yu Zhang; Hui Li; Yuan Sun; Liqi Wang; Mian Guo; Ke Han
Journal:  Biomed Res Int       Date:  2021-02-09       Impact factor: 3.411
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