Literature DB >> 27726035

Phylotype Dynamics of Bacterial P Utilization Genes in Microbialites and Bacterioplankton of a Monomictic Endorheic Lake.

Patricia M Valdespino-Castillo1,2, Rocío J Alcántara-Hernández3, Martín Merino-Ibarra4, Javier Alcocer5, Miroslav Macek5,6, Octavio A Moreno-Guillén1,7, Luisa I Falcón8.   

Abstract

Microbes can modulate ecosystem function since they harbor a vast genetic potential for biogeochemical cycling. The spatial and temporal dynamics of this genetic diversity should be acknowledged to establish a link between ecosystem function and community structure. In this study, we analyzed the genetic diversity of bacterial phosphorus utilization genes in two microbial assemblages, microbialites and bacterioplankton of Lake Alchichica, a semiclosed (i.e., endorheic) system with marked seasonality that varies in nutrient conditions, temperature, dissolved oxygen, and water column stability. We focused on dissolved organic phosphorus (DOP) utilization gene dynamics during contrasting mixing and stratification periods. Bacterial alkaline phosphatases (phoX and phoD) and alkaline beta-propeller phytases (bpp) were surveyed. DOP utilization genes showed different dynamics evidenced by a marked change within an intra-annual period and a differential circadian pattern of expression. Although Lake Alchichica is a semiclosed system, this dynamic turnover of phylotypes (from lake circulation to stratification) points to a different potential of DOP utilization by the microbial communities within periods. DOP utilization gene dynamics was different among genetic markers and among assemblages (microbialite vs. bacterioplankton). As estimated by the system's P mass balance, P inputs and outputs were similar in magnitude (difference was <10 %). A theoretical estimation of water column P monoesters was used to calculate the potential P fraction that can be remineralized on an annual basis. Overall, bacterial groups including Proteobacteria (Alpha and Gamma) and Bacteroidetes seem to be key participants in DOP utilization responses.

Entities:  

Keywords:  DOP utilization; Extracellular enzymes; Microbial functional diversity; P turnover; Phylotype seasonality; Phytase

Mesh:

Substances:

Year:  2016        PMID: 27726035     DOI: 10.1007/s00248-016-0862-1

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  32 in total

1.  Protein structure prediction and structural genomics.

Authors:  D Baker; A Sali
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

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Authors:  C P Ponting
Journal:  Protein Sci       Date:  1996-11       Impact factor: 6.725

3.  New insights into bacterial acquisition of phosphorus in the surface ocean.

Authors:  Angelicque E White
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-08       Impact factor: 11.205

4.  Phosphorylation of p47phox directs phox homology domain from SH3 domain toward phosphoinositides, leading to phagocyte NADPH oxidase activation.

Authors:  Tetsuro Ago; Futoshi Kuribayashi; Hidekazu Hiroaki; Ryu Takeya; Takashi Ito; Daisuke Kohda; Hideki Sumimoto
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-02       Impact factor: 11.205

5.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

6.  Calcium-dependent catalytic activity of a novel phytase from Bacillus amyloliquefaciens DS11.

Authors:  B C Oh; B S Chang; K H Park; N C Ha; H K Kim; B H Oh; T K Oh
Journal:  Biochemistry       Date:  2001-08-14       Impact factor: 3.162

7.  Diversity of beta-propeller phytase genes in the intestinal contents of grass carp provides insight into the release of major phosphorus from phytate in nature.

Authors:  Huoqing Huang; Pengjun Shi; Yaru Wang; Huiying Luo; Na Shao; Guozeng Wang; Peilong Yang; Bin Yao
Journal:  Appl Environ Microbiol       Date:  2009-01-16       Impact factor: 4.792

8.  The NCBI BioSystems database.

Authors:  Lewis Y Geer; Aron Marchler-Bauer; Renata C Geer; Lianyi Han; Jane He; Siqian He; Chunlei Liu; Wenyao Shi; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

9.  Characterization of the rate and temperature sensitivities of bacterial remineralization of dissolved organic phosphorus compounds by natural populations.

Authors:  Angelicque E White; Katie S Watkins-Brandt; Morgan A Engle; Brian Burkhardt; Adina Paytan
Journal:  Front Microbiol       Date:  2012-08-10       Impact factor: 5.640

10.  The InterPro protein families database: the classification resource after 15 years.

Authors:  Alex Mitchell; Hsin-Yu Chang; Louise Daugherty; Matthew Fraser; Sarah Hunter; Rodrigo Lopez; Craig McAnulla; Conor McMenamin; Gift Nuka; Sebastien Pesseat; Amaia Sangrador-Vegas; Maxim Scheremetjew; Claudia Rato; Siew-Yit Yong; Alex Bateman; Marco Punta; Teresa K Attwood; Christian J A Sigrist; Nicole Redaschi; Catherine Rivoire; Ioannis Xenarios; Daniel Kahn; Dominique Guyot; Peer Bork; Ivica Letunic; Julian Gough; Matt Oates; Daniel Haft; Hongzhan Huang; Darren A Natale; Cathy H Wu; Christine Orengo; Ian Sillitoe; Huaiyu Mi; Paul D Thomas; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2014-11-26       Impact factor: 16.971

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  2 in total

1.  Exploring Biogeochemistry and Microbial Diversity of Extant Microbialites in Mexico and Cuba.

Authors:  Patricia M Valdespino-Castillo; Ping Hu; Martín Merino-Ibarra; Luz M López-Gómez; Daniel Cerqueda-García; Roberto González-De Zayas; Teresa Pi-Puig; Julio A Lestayo; Hoi-Ying Holman; Luisa I Falcón
Journal:  Front Microbiol       Date:  2018-04-03       Impact factor: 5.640

2.  Conserved bacterial genomes from two geographically isolated peritidal stromatolite formations shed light on potential functional guilds.

Authors:  Samantha C Waterworth; Eric W Isemonger; Evan R Rees; Rosemary A Dorrington; Jason C Kwan
Journal:  Environ Microbiol Rep       Date:  2020-12-27       Impact factor: 3.541

  2 in total

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