Literature DB >> 27716995

UV-Induced DNA Damage and Mutagenesis in Chromatin.

Peng Mao1, John J Wyrick1,2, Steven A Roberts1, Michael J Smerdon1.   

Abstract

UV radiation induces photolesions that distort the DNA double helix and, if not repaired, can cause severe biological consequences, including mutagenesis or cell death. In eukaryotes, both the formation and repair of UV damage occur in the context of chromatin, in which genomic DNA is packaged with histones into nucleosomes and higher order chromatin structures. Here, we review how chromatin impacts the formation of UV photoproducts in eukaryotic cells. We describe the initial discovery that nucleosomes and other DNA binding proteins induce characteristic "photofootprints" during the formation of UV photoproducts. We also describe recent progress in genomewide methods for mapping UV damage, which echoes early biochemical studies, and highlights the role of nucleosomes and transcription factors in UV damage formation and repair at unprecedented resolution. Finally, we discuss our current understanding of how the distribution and repair of UV-induced DNA damage influence mutagenesis in human skin cancers.
© 2016 The American Society of Photobiology.

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Year:  2016        PMID: 27716995      PMCID: PMC5315636          DOI: 10.1111/php.12646

Source DB:  PubMed          Journal:  Photochem Photobiol        ISSN: 0031-8655            Impact factor:   3.421


  88 in total

1.  Genome-wide location and function of DNA binding proteins.

Authors:  B Ren; F Robert; J J Wyrick; O Aparicio; E G Jennings; I Simon; J Zeitlinger; J Schreiber; N Hannett; E Kanin; T L Volkert; C J Wilson; S P Bell; R A Young
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

Review 2.  Role of DNA sequence in nucleosome stability and dynamics.

Authors:  J Widom
Journal:  Q Rev Biophys       Date:  2001-08       Impact factor: 5.318

3.  Rapid spontaneous accessibility of nucleosomal DNA.

Authors:  Gu Li; Marcia Levitus; Carlos Bustamante; Jonathan Widom
Journal:  Nat Struct Mol Biol       Date:  2004-12-05       Impact factor: 15.369

4.  DNA stretching and extreme kinking in the nucleosome core.

Authors:  Michelle S Ong; Timothy J Richmond; Curt A Davey
Journal:  J Mol Biol       Date:  2007-03-02       Impact factor: 5.469

5.  Synthesis and nucleosome structure of DNA containing a UV photoproduct at a specific site.

Authors:  J V Kosmoski; M J Smerdon
Journal:  Biochemistry       Date:  1999-07-20       Impact factor: 3.162

6.  Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin.

Authors:  J R Pehrson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

7.  A comprehensive catalogue of somatic mutations from a human cancer genome.

Authors:  Erin D Pleasance; R Keira Cheetham; Philip J Stephens; David J McBride; Sean J Humphray; Chris D Greenman; Ignacio Varela; Meng-Lay Lin; Gonzalo R Ordóñez; Graham R Bignell; Kai Ye; Julie Alipaz; Markus J Bauer; David Beare; Adam Butler; Richard J Carter; Lina Chen; Anthony J Cox; Sarah Edkins; Paula I Kokko-Gonzales; Niall A Gormley; Russell J Grocock; Christian D Haudenschild; Matthew M Hims; Terena James; Mingming Jia; Zoya Kingsbury; Catherine Leroy; John Marshall; Andrew Menzies; Laura J Mudie; Zemin Ning; Tom Royce; Ole B Schulz-Trieglaff; Anastassia Spiridou; Lucy A Stebbings; Lukasz Szajkowski; Jon Teague; David Williamson; Lynda Chin; Mark T Ross; Peter J Campbell; David R Bentley; P Andrew Futreal; Michael R Stratton
Journal:  Nature       Date:  2009-12-16       Impact factor: 49.962

8.  Binding of transcription factors creates hot spots for UV photoproducts in vivo.

Authors:  G P Pfeifer; R Drouin; A D Riggs; G P Holmquist
Journal:  Mol Cell Biol       Date:  1992-04       Impact factor: 4.272

Review 9.  Genomic approaches to DNA repair and mutagenesis.

Authors:  John J Wyrick; Steven A Roberts
Journal:  DNA Repair (Amst)       Date:  2015-09-15

10.  A map of nucleosome positions in yeast at base-pair resolution.

Authors:  Kristin Brogaard; Liqun Xi; Ji-Ping Wang; Jonathan Widom
Journal:  Nature       Date:  2012-06-28       Impact factor: 49.962

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  27 in total

Review 1.  Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans.

Authors:  Jinchuan Hu; Christopher P Selby; Sheera Adar; Ogun Adebali; Aziz Sancar
Journal:  J Biol Chem       Date:  2017-08-10       Impact factor: 5.157

2.  Unencumbered Pol β lyase activity in nucleosome core particles.

Authors:  Yesenia Rodriguez; Michael J Howard; Matthew J Cuneo; Rajendra Prasad; Samuel H Wilson
Journal:  Nucleic Acids Res       Date:  2017-09-06       Impact factor: 16.971

3.  A cassette of basic amino acids in histone H2B regulates nucleosome dynamics and access to DNA damage.

Authors:  Yesenia Rodriguez; Mingrui Duan; John J Wyrick; Michael J Smerdon
Journal:  J Biol Chem       Date:  2018-03-27       Impact factor: 5.157

4.  Genome-wide mapping of nucleotide excision repair with XR-seq.

Authors:  Jinchuan Hu; Wentao Li; Ogun Adebali; Yanyan Yang; Onur Oztas; Christopher P Selby; Aziz Sancar
Journal:  Nat Protoc       Date:  2019-01       Impact factor: 13.491

5.  Dynamic maps of UV damage formation and repair for the human genome.

Authors:  Jinchuan Hu; Ogun Adebali; Sheera Adar; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

Review 6.  Organization of DNA damage, excision repair, and mutagenesis in chromatin: A genomic perspective.

Authors:  Peng Mao; John J Wyrick
Journal:  DNA Repair (Amst)       Date:  2019-07-08

7.  Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.

Authors:  Wentao Li; Ogun Adebali; Yanyan Yang; Christopher P Selby; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-26       Impact factor: 11.205

Review 8.  TGFβ Signaling in Photoaging and UV-Induced Skin Cancer.

Authors:  Yao Ke; Xiao-Jing Wang
Journal:  J Invest Dermatol       Date:  2021-01-07       Impact factor: 8.551

9.  Impact of DNA sequences on DNA 'opening' by the Rad4/XPC nucleotide excision repair complex.

Authors:  Debamita Paul; Hong Mu; Amirrasoul Tavakoli; Qing Dai; Sagnik Chakraborty; Chuan He; Anjum Ansari; Suse Broyde; Jung-Hyun Min
Journal:  DNA Repair (Amst)       Date:  2021-07-29

Review 10.  Behind the Scene: Exploiting MC1R in Skin Cancer Risk and Prevention.

Authors:  Michele Manganelli; Stefania Guida; Anna Ferretta; Giovanni Pellacani; Letizia Porcelli; Amalia Azzariti; Gabriella Guida
Journal:  Genes (Basel)       Date:  2021-07-19       Impact factor: 4.096

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