| Literature DB >> 27716311 |
Fredrik Strand1,2, Keith Humphreys3,4, Abbas Cheddad3, Sven Törnberg5, Edward Azavedo6,7, John Shepherd8, Per Hall3, Kamila Czene3.
Abstract
BACKGROUND: Interval breast cancers are often diagnosed at a more advanced stage than screen-detected cancers. Our aim was to identify features in screening mammograms of the normal breast that would differentiate between future interval cancers and screen-detected cancers, and to understand how each feature affects tumor detectability.Entities:
Keywords: Breast cancer; Cancer screening; Computer-assisted image processing; Early detection; Interval cancer; Mammography
Mesh:
Year: 2016 PMID: 27716311 PMCID: PMC5053212 DOI: 10.1186/s13058-016-0761-x
Source DB: PubMed Journal: Breast Cancer Res ISSN: 1465-5411 Impact factor: 6.466
p values for the association between each feature and IC versus SC, from logistic regression modelling, adjusted for mammographic percent destiny
|
| ||||
|---|---|---|---|---|
| Dense area selection method | ||||
| Image feature | (1) Percentile | (2) Entropy | (3) Otsu's method | Technical feature description - all listed features are based on the identified dense area |
| F1 | 0.058 | 0.069 | 0.575 | DC coefficient of two-dimensional discrete cosine transform |
| F2 | 0.636 |
| 0.233 | The approximation coefficient of the multilevel discrete two-dimensional wavelet transform |
| F3 |
| 0.660 |
| The max coefficient of the two-dimensional discrete Fourier transform of the local range filter |
| F4 | 0.193 | 0.697 |
| Kurtosis of the intensity histogram |
| F5 | 0.388 | 0.334 | 0.053 | Skewness of the intensity histogram |
| F6 | 0.074 |
|
| Entropy of the intensity histogram |
| F7 | 0.282 |
| 0.969 | The mean of entropy-filtered selected area |
| F8 | 0.467 |
| 0.793 | Entropy of the complex imaginary part of the convolved selected area with log-Gabor filters |
| F9 | 0.624 |
| 0.969 | Entropy of the complex real part of the convolved selected area with log-Gabor filters |
| F10 | 0.582 |
| 0.676 | Entropy of the magnitude part of the convolved selected area with log-Gabor filters |
| F11 |
| 0.148 | 0.235 | The max coefficient of the two-dimensional discrete Fourier transform |
| F12 | 0.995 |
| 0.234 | Entropy of the normalized co-occurrence matrix |
| F14 | 0.600 | 0.751 | 0.326 | The max coefficient of the two-dimensional discrete Fourier transform of the Hessian filter |
| F16 | 0.058 | 0.088 | 0.582 | The max coefficient of the log of the magnitude part of the discrete cosine transform |
| F17 |
| 0.146 | 0.235 | The max coefficient of the log of the magnitude part of the discrete Fourier transform |
| F18 | 0.111 | 0.078 | 0.443 | The fourth central moment |
| F19 |
| 0.726 |
| Number of separate blobs |
| F20 | 0.312 |
| 0.129 | Solidity |
| F21 |
| 0.970 |
| Eccentricity |
| F22 | 0.966 | 0.240 | 0.365 | Euler number |
| F24 |
| 0.931 |
| Skewness of the normalized singular value decomposition/its standard deviation |
| F25 |
| 0.164 | 0.291 | Singular value decomposition |
| F26 |
| 0.269 | 0.795 | Number of holes within the selected area (low intensity surrounded by high intensity) |
| F27 | 0.063 |
|
| Interquartile range of the intensity histogram |
| F33 | 0.225 | 0.317 | 0.322 | Kurtosis of the projection along the Y axis |
| F34 | 0.065 | 0.136 | 0.201 | Kurtosis of the projection along the X axis |
| F35 |
| 0.211 | 0.582 | Perimeter of the selected area |
| F37 | 0.317 |
| 0.415 | Mean intensity |
| F39 | 0.358 | 0.168 | 0.283 | Median intensity |
| F40 | 0.145 |
|
| Skewness of the intensity gradient |
| F41 | 0.172 |
| 0.946 | Energy property of the co-occurrence matrix of the selected area - horizontal shift two pixels |
| F42 | 0.261 |
| 0.984 | Energy property of the co-occurrence matrix of the selected area - diagonal shift eight pixels |
p values in bold font signifies that they are below 0.05. Only features based on the dense area of the mammogram were included
1C interval breast cancer, SC screen-detected breast cancer
Patient, mammographic and tumor characteristics (primary study sample)
| Study sample ( | ||||
|---|---|---|---|---|
| 1C ( | SC ( |
| Missing data | |
| PATIENT CHARACTERISTICS | ||||
| Age at diagnosis | 60.8 | 60.2 | 0.055 | 0 % |
| Menopausal at diagnosis | 0.150 | 6.4 % | ||
| Yes | 297 (81 %) | 794 (84 %) | ||
| No | 71 (19 %) | 151 (16 %) | ||
| BMI | 24.8 | 25.8 | <0.001 | 3.2 % |
| HRT use at diagnosis | <0.001 | 5.1 % | ||
| No | 280 (75 %) | 802 (84 %) | ||
| Yes | 93 (25 %) | 156 (16 %) | ||
| Oral contraceptive use | 0.145 | 3.1 % | ||
| No | 78 (21 %) | 239 (24 %) | ||
| Yes | 300 (79 %) | 742 (76 %) | ||
| Parity | ||||
| Nulliparous | 61 (15 %) | 158 (16 %) | 0.997 | 2.2 % |
| Number of births, parous women | 2.13 | 2.14 | 0.816 | 0 % |
| Age at first birth, parous women | 25.7 | 25.4 | 0.341 | 0 % |
| Family history of breast cancer (first degree) | 0.029 | 7.8 % | ||
| No | 284 (77 %) | 762 (82 %) | ||
| Yes | 84 (23 %) | 162 (18 %) | ||
| MAMMOGRAPHIC CHARACTERISTICS | ||||
| Time (months) from measure to diagnosis | 15.3 (median) | 24.6 (median) | <0.001 | |
| Mammographic percent density | 23.5 (median) | 17.6 (median) | <0.001 | |
| TUMOR CHARACTERISTICS | n (%) or mean | n (%) or mean | ||
| Tumor size, mm | 19.5 | 15.6 | <0.001 | 7.3 % |
| Lymph node metastasis | <0.001 | 0.4 % | ||
| No | 356 (91 %) | 960 (96 %) | ||
| Yes | 37 (9 %) | 45 (4 %) | ||
| Tumor grade, Elston | <0.001 | 42 % | ||
| 1 | 35 (16 %) | 147 (25 %) | ||
| 2 | 109 (50 %) | 323 (54 %) | ||
| 3 | 75 (34 %) | 127 (21 %) | ||
| ER status | <0.001 | 27 % | ||
| Negative | 57 (19 %) | 72 (10 %) | ||
| Positive | 239 (81 %) | 659 (90 %) | ||
| PR status | 0.002 | 28 % | ||
| Negative | 109 (38 %) | 201 (28 %) | ||
| Positive | 181 (62 %) | 520 (72 %) | ||
p values for difference between the 1C and SC group were calculated by two-sided t test for continuous variables; and by chi square tests for categorical variables. See Additional file 1: Table S1 for patient and mammographic data for the validation sample
1C interval breast cancer, SC screen-detected breast cancer, BMI body mass index, HRT hormone replacement therapy, ER estrogen receptor, PR progesterone receptor
Fig. 1Feature F40 – ‘skewness of the intensity gradient’. Example of mammograms in our study which have a similar amount of dense area but differ in ‘skewness of the intensity gradient’. Our interpretation is that a high value corresponds to a more consolidated dense area, and a low value to a more scattered dense area
Fig. 2Feature F21 – ‘eccentricity’. Example of mammograms in our study which have a similar amount of total breast area and dense area but differ in ‘eccentricity’. Our interpretation is that a high value corresponds to a more elongated overall shape of the dense area, and a low value to a more circular shape
Associations between identified dense area features and IC versus SC based on multivariate logistic regression modelling
| Odds ratios (95 % Cl) for interval versus screen-detected cancer, estimated by logistic regression modelling | ||||
|---|---|---|---|---|
| Primary cohort | Validation cohort | |||
| Covariate | Model 1 | Model 2 | Model 3 | Model 3 |
| Percent density | 1.37 (1.22 to 1.53) | 1.23 (1.08 to 1.41) | 0.98 (0,81 to 1.17) | 1.04 (0.86 to 1.24) |
| BMI | - | 0.84 (0.73 to 0.98) | 0.88 (0.76 to 1.02) | 0.98 (0.84 to 1.15) |
| HRT use at diagnosis | - | 1.57 (1.17 to 2.11) | 1.53 (1.14 to 2.07) | 1.32 (0.99 to 1.77) |
| Age at diagnosis | - | 0.98 (0.87 to 1.12) | 1.01 (0.89 to 1.15) | 0.90 (0.77 to 1.05) |
| F40 skewness of the intensity gradient | - | - | 1.32 (1.12 to 1.56) | 1.21 (1.04 to 1.41) |
| F21 eccentricity | - | - | 1.20 (1.04 to 1.39) | 1.17 (0.98 to 1.39) |
Feature values calculated based on the dense area of the mammogram as identified by Otsu's method, then Box-Cox transformed and standardized. Odds ratios are estimated as per-standard deviation change in the underlying covariate. Validation cohort is an older breast cancer cohort with similar covariate definitions as the primary cohort
1C interval breast cancer, SC screen-detected breast cancer, 95 % CI 95 % confidence interval, BMI body mass index, HRT hormone replacement therapy
Association between each identified feature and the tumor size, stratified by detection mode
| Beta coefficient ( | |||
|---|---|---|---|
| Subgroup | |||
| Image feature | All cancers ( | Screen-detected ( | Interval cancer ( |
| F40 skewness of the intensity gradient |
|
| -0.05 ( |
| F21 eccentricity | 0.021 ( | 0.055 ( |
|
Tumor size was square-root transformed
Feature values calculated based on the dense area of the mammogram as identified by Otsu's method, then Box-Cox transformed and standardized beta coefficients represent the mean change in tumor size (measured in mm) per standard deviation change in transformed feature value Cl 95 % confidence interval. p values in bold font signifies that they are below 0.05
Fig. 3Illustration of combinations of the two identified features. Schematic images of four different dense areas with a high versus low value of ‘skewness of the intensity gradient’ and ‘eccentricity’