| Literature DB >> 27716291 |
Manuel Nieto-Domínguez1, Alicia Prieto1, Beatriz Fernández de Toro2, Francisco Javier Cañada2, Jorge Barriuso1, Zach Armstrong3, Stephen G Withers3, Laura I de Eugenio4, María Jesús Martínez5.
Abstract
BACKGROUND: Glycosides are compounds displaying crucial biological roles and plenty of applications. Traditionally, these molecules have been chemically obtained, but its efficient production is limited by the lack of regio- and stereo-selectivity of the chemical synthesis. As an interesting alternative, glycosidases are able to catalyze the formation of glycosides in a process considered green and highly selective. In this study, we report the expression and characterization of a fungal β-xylosidase in Pichia pastoris. The transglycosylation potential of the enzyme was evaluated and its applicability in the synthesis of a selective anti-proliferative compound demonstrated.Entities:
Keywords: 2-(6-hydroxynaphthyl) β-D-xylopyranoside; Box-Behnken design; N-Glycosylation; Pichia pastoris; Response surface methodology; Transxylosylation; β-Xylosidase
Mesh:
Substances:
Year: 2016 PMID: 27716291 PMCID: PMC5050587 DOI: 10.1186/s12934-016-0568-6
Source DB: PubMed Journal: Microb Cell Fact ISSN: 1475-2859 Impact factor: 5.328
Fig. 1Transxylosylation reaction catalyzed by a retaining β-xylosidase
Box–Behnken experimental design for optimization of 2-(6-hydroxynaphthyl)-β-d-xylopyranoside
| 2,6-DHN (g/L) | Temperature (°C) | Xylobiose (mM) | Time (min) | Enzyme (g/L) | pH | [Product] (mM) |
|---|---|---|---|---|---|---|
| 0.30 | 40 | 60 | 10 | 0.055 | 4.1 | 0.04 |
| 3.00 | 40 | 60 | 10 | 0.055 | 4.1 | 0.45 |
| 0.30 | 60 | 60 | 10 | 0.055 | 4.1 | 0.05 |
| 3.00 | 60 | 60 | 10 | 0.055 | 4.1 | 0.37 |
| 0.30 | 40 | 60 | 60 | 0.055 | 4.1 | 0.13 |
| 3.00 | 40 | 60 | 60 | 0.055 | 4.1 | 1.09 |
| 0.30 | 60 | 60 | 60 | 0.055 | 4.1 | 0.12 |
| 3.00 | 60 | 60 | 60 | 0.055 | 4.1 | 0.55 |
| 1.65 | 40 | 20 | 35 | 0.010 | 4.1 | 0.13 |
| 1.65 | 60 | 20 | 35 | 0.010 | 4.1 | 0.05 |
| 1.65 | 40 | 100 | 35 | 0.010 | 4.1 | 0.13 |
| 1.65 | 60 | 100 | 35 | 0.010 | 4.1 | 0.07 |
| 1.65 | 40 | 20 | 35 | 0.100 | 4.1 | 0.34 |
| 1.65 | 60 | 20 | 35 | 0.100 | 4.1 | 0.41 |
| 1.65 | 40 | 100 | 35 | 0.100 | 4.1 | 0.80 |
| 1.65 | 60 | 100 | 35 | 0.100 | 4.1 | 0.83 |
| 1.65 | 50 | 20 | 10 | 0.055 | 2.2 | 0.23 |
| 1.65 | 50 | 100 | 10 | 0.055 | 2.2 | 0.11 |
| 1.65 | 50 | 20 | 60 | 0.055 | 2.2 | 0.37 |
| 1.65 | 50 | 100 | 60 | 0.055 | 2.2 | 0.55 |
| 1.65 | 50 | 20 | 10 | 0.055 | 6.0 | 0.26 |
| 1.65 | 50 | 100 | 10 | 0.055 | 6.0 | 0.29 |
| 1.65 | 50 | 20 | 60 | 0.055 | 6.0 | 0.48 |
| 1.65 | 50 | 100 | 60 | 0.055 | 6.0 | 0.80 |
| 0.30 | 50 | 60 | 10 | 0.010 | 4.1 | 0.00 |
| 3.00 | 50 | 60 | 10 | 0.010 | 4.1 | 0.07 |
| 0.30 | 50 | 60 | 60 | 0.010 | 4.1 | 0.05 |
| 3.00 | 50 | 60 | 60 | 0.010 | 4.1 | 0.31 |
| 0.30 | 50 | 60 | 10 | 0.100 | 4.1 | 0.09 |
| 3.00 | 50 | 60 | 10 | 0.100 | 4.1 | 0.85 |
| 0.30 | 50 | 60 | 60 | 0.100 | 4.1 | 0.11 |
| 3.00 | 50 | 60 | 60 | 0.100 | 4.1 | 1.31 |
| 1.65 | 40 | 60 | 35 | 0.010 | 2.2 | 0.18 |
| 1.65 | 60 | 60 | 35 | 0.010 | 2.2 | 0.00 |
| 1.65 | 40 | 60 | 35 | 0.100 | 2.2 | 0.67 |
| 1.65 | 60 | 60 | 35 | 0.100 | 2.2 | 0.19 |
| 1.65 | 40 | 60 | 35 | 0.010 | 6.0 | 0.13 |
| 1.65 | 60 | 60 | 35 | 0.010 | 6.0 | 0.02 |
| 1.65 | 40 | 60 | 35 | 0.100 | 6.0 | 0.77 |
| 1.65 | 60 | 60 | 35 | 0.100 | 6.0 | 0.49 |
| 0.30 | 50 | 20 | 35 | 0.055 | 2.2 | 0.05 |
| 3.00 | 50 | 20 | 35 | 0.055 | 2.2 | 0.49 |
| 0.30 | 50 | 100 | 35 | 0.055 | 2.2 | 0.10 |
| 3.00 | 50 | 100 | 35 | 0.055 | 2.2 | 0.66 |
| 0.30 | 50 | 20 | 35 | 0.055 | 6.0 | 0.06 |
| 3.00 | 50 | 20 | 35 | 0.055 | 6.0 | 0.66 |
| 0.30 | 50 | 100 | 35 | 0.055 | 6.0 | 0.11 |
| 3.00 | 50 | 100 | 35 | 0.055 | 6.0 | 0.67 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.68 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.69 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.67 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.67 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.70 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.65 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.67 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.66 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.66 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.68 |
| 1.65 | 50 | 60 | 35 | 0.055 | 4.1 | 0.66 |
Fig. 2Extracellular β-xylosidase activity and absorbance at 600 nm of P. pastoris cultures in YEPS medium with 5 g/L methanol
Comparative production data of GH3 fungal β-xylosidases heterologously expressed in P. pastoris
| Enzyme | Source | Production (U/mL) | References |
|---|---|---|---|
| rBxTW1 |
| 8.0 | This work |
| AnBX (Opt) |
| 4.62 | [ |
| Xyl3A |
| 1.16a | [ |
| AnXln3D |
| 6.46 | [ |
| NCU09923 |
| 3.04a | [ |
| AN2359.2 |
| 3 | [ |
| Bxl1 |
| 14.9 | [ |
| XylA |
| 0.33 | [ |
aNot included in the original article but calculated with data provided
Fig. 3Estimation of rBxTW1 molecular mass by a SDS-PAGE and b MALDI-TOF MS. Lanes 1 molecular mass standards; 2 glycosylated BxTW1; 3 BxTW1 treated with Endo H. Intens., intensity; a.u., arbitrary units
Kinetic parameters of rBxTW1
| Substrate |
|
|
|
|
|---|---|---|---|---|
|
| 0.20 ± 0.01 | 20.8 ± 0.3 | 69.3 | 336 |
|
| 1.6 ± 0.1 | 8.3 ± 0.2 | 28 | 17 |
|
| 4.3 ± 0.3 | 14.9 ± 0.4 | 49.8 | 12 |
| Xylobiose | 0.51 ± 0.03 | 26.4 ± 0.3 | 87.9 | 170 |
| Xylotriose | 0.19 ± 0.01 | 9.0 ± 0.1 | 30 | 160 |
| Xylotetraose | 0.20 ± 0.01 | 6.34 ± 0.06 | 21.1 | 100 |
| Xylopentaose | 0.22 ± 0.01 | 4.48 ± 0.05 | 14.9 | 68 |
| Xylohexaose | 0.21 ± 0.02 | 4.27 ± 0.07 | 14.2 | 69 |
Fig. 4Effect on rBxTW1 activity of: a pH and b temperature. a The line indicates the effect of pH on enzyme activity, and the bars show its stability over a range of pH values from 2.2 to 9 after 72 h. b The line displays the evolution of residual activity for T50 determination, and the bars correspond to the effect of the reaction temperature on enzyme activity
Monosaccharide distribution and linkage types present in the carbohydrate moiety of the native and recombinant BxTW1
| Characteristic ions (m/z) | Content (%) | ||
|---|---|---|---|
| Native | Recombinant | ||
| Monosaccharide | |||
| Mannose | 43, 115, 145, 187, 217, 259, 361 | 68.7 | 91.9 |
| Glucose | 43, 115, 145, 187, 217, 259, 361 | 13.1 | 1.9 |
| Glucosamine | 43, 84, 102, 144, 156, 258, 318, 360 | 12.1 | 6.2 |
| Galactose | 43, 115, 145, 187, 217, 259, 361 | 6.1 | – |
| Deduced linkage | |||
| Man | 87, 88, 102, 118, 129, 161, 205 | 27.5 | 29.0 |
| Gal | 89, 101, 102, 118, 162, 205 | 3.0 | 0.4 |
| →2)-Man | 87, 88, 101, 129, 130, 161, 190 | 18.1 | 35.3 |
| →3)-Man | 101, 118, 129, 161, 234 | 0.0 | 2.0 |
| →6)-Man | 87, 88, 99, 102, 118, 129, 162, 189 | 16.4 | 3.4 |
| →2,3)-Man | 101, 129, 161, 202, 262 | 0.0 | 1.3 |
| →2,6)-Man | 117, 118, 129, 130, 189, 190 | 1.9 | 14.0 |
| →3,6)-Man | 118, 129, 189, 174, 234 | 14.5 | 8.1 |
| →3,4,6)-Man | 118, 139 | 6.3 | 0.5 |
| →4)-Glc | 117, 159, 233 | 12.3 | 4.6 |
Fig. 5Heat map of inhibition recovery of rBxTW1 in the presence of the assayed compounds. Those compounds giving values between no-acceptor and the no-inhibition controls were considered potential acceptors of transxylosylation
ANOVA report from the quadratic model for xyloside production
| Source | Sum of squares | df | Mean square | F value | p value |
|---|---|---|---|---|---|
| Model | 5.59 | 27 | 0.21 | 32.28 | <0.0001 |
| Residual | 0.21 | 32 | 6.42 × 10−3 | ||
| Lack of fit | 0.20 | 21 | 9.67 × 10−3 | 48.72 | <0.0001 |
| Pure error | 2.18 × 10−3 | 11 | 1.99 × 10−4 | ||
| Cor total | 5.59 | 27 | 0.21 | 32.28 | <0.0001 |
aValues of prob > F less than 0.0500 indicate model terms are significant
Fig. 6a 2-(6-hydroxynaphthyl) β-d-xylopyranoside (product 1) and b 2-(6-hydroxynaphthyl) β-d-xylobioside (product 2) synthesized by rBxTW1 catalyzed transxylosylation. a Product 1 is formed in one step when a xylose moiety is attached to an hydroxyl group of 2,6-DHN. b The attachment of a second xylose to the former one by a β(1 → 4) linkage converts product 1 into product 2
Chemical shift data from 2-(6-hydroxynaphthyl) β-d-xylopyranoside and 2-(6-hydroxynaphthyl) β-d-xylobioside
| 2-(6-hydroxynaphthyl) β | 2-(6-hydroxynaphthyl) β | |||
|---|---|---|---|---|
| 1H (ppm) | 13C (ppm) | 1H (ppm) | 13C (ppm) | |
| H1′ | – | – | 4.54 | 102.14 |
| H2′ | 3.33 | 73.05 | ||
| H3′ | 3.49 | 75.88 | ||
| H4′ | 3.69 | 69.50 | ||
| H5′ | 3.37 | 65.50 | ||
| H5′ | 4.04 | |||
| H1 | 5.22 | 101.35 | 5.24 | 101.27 |
| H2 | 3.65 | 73.17 | 3.69 | 72.98 |
| H3 | 3.64 | 75.79 | 3.76 | 73.95 |
| H4 | 3.78 | 69.39 | 3.94 | 76.60 |
| H5 | 3.56 | 65.50 | 3.64 | 63.13 |
| H5 | 4.10 | 4.23 | ||
| Naphthalene ring | 7.24 | 119.21 | 7.24 | 119.21 |
| 7.31 | 109.64 | 7.31 | 109.64 | |
| 7.34 | 119.59 | 7.34 | 119.59 | |
| 7.53 | 111.78 | 7.53 | 111.78 | |
| 7.82 | 128.49 | 7.82 | 128.49 | |
| 7.84 | 129.27 | 7.84 | 129.27 | |