Literature DB >> 27714969

Raman spectroscopic identification of Mycobacterium tuberculosis.

Stephan Stöckel1,2, Susann Meisel1,2, Björn Lorenz1,2, Sandra Kloß1,2, Sandra Henk3, Stefan Dees3, Elvira Richter4,5, Sönke Andres4, Matthias Merker6, Ines Labugger3, Petra Rösch1,2, Jürgen Popp1,2,7.   

Abstract

In this study, Raman microspectroscopy has been utilized to identify mycobacteria to the species level. Because of the slow growth of mycobacteria, the per se cultivation-independent Raman microspectroscopy emerges as a perfect tool for a rapid on-the-spot mycobacterial diagnostic test. Special focus was laid upon the identification of Mycobacterium tuberculosis complex (MTC) strains, as the main causative agent of pulmonary tuberculosis worldwide, and the differentiation between pathogenic and commensal nontuberculous mycobacteria (NTM). Overall the proposed model considers 26 different mycobacteria species as well as antibiotic susceptible and resistant strains. More than 8800 Raman spectra of single bacterial cells constituted a spectral library, which was the foundation for a two-level classification system including three support vector machines. Our model allowed the discrimination of MTC samples in an independent validation dataset with an accuracy of 94% and could serve as a basis to further improve Raman microscopy as a first-line diagnostic point-of-care tool for the confirmation of tuberculosis disease.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  M. tuberculosis; Raman spectroscopy; analytical methods; identification; microscopy; mycobacteria

Mesh:

Year:  2016        PMID: 27714969     DOI: 10.1002/jbio.201600174

Source DB:  PubMed          Journal:  J Biophotonics        ISSN: 1864-063X            Impact factor:   3.207


  7 in total

1.  Diagnosis of dengue virus infection using spectroscopic images and deep learning.

Authors:  Mehdi Hassan; Safdar Ali; Muhammad Saleem; Muhammad Sanaullah; Labiba Gillani Fahad; Jin Young Kim; Hani Alquhayz; Syed Fahad Tahir
Journal:  PeerJ Comput Sci       Date:  2022-06-01

2.  Discrimination between pathogenic and non-pathogenic E. coli strains by means of Raman microspectroscopy.

Authors:  Björn Lorenz; Nairveen Ali; Thomas Bocklitz; Petra Rösch; Jürgen Popp
Journal:  Anal Bioanal Chem       Date:  2020-10-08       Impact factor: 4.142

3.  In vivo biomolecular imaging of zebrafish embryos using confocal Raman spectroscopy.

Authors:  Håkon Høgset; Conor C Horgan; James P K Armstrong; Mads S Bergholt; Vincenzo Torraca; Qu Chen; Timothy J Keane; Laurence Bugeon; Margaret J Dallman; Serge Mostowy; Molly M Stevens
Journal:  Nat Commun       Date:  2020-12-02       Impact factor: 14.919

4.  Detection of multi-resistant clinical strains of E. coli with Raman spectroscopy.

Authors:  Amir Nakar; Aikaterini Pistiki; Oleg Ryabchykov; Thomas Bocklitz; Petra Rösch; Jürgen Popp
Journal:  Anal Bioanal Chem       Date:  2022-01-04       Impact factor: 4.142

5.  Highly Accurate Identification of Bacteria's Antibiotic Resistance Based on Raman Spectroscopy and U-Net Deep Learning Algorithms.

Authors:  Zakarya Al-Shaebi; Fatma Uysal Ciloglu; Mohammed Nasser; Omer Aydin
Journal:  ACS Omega       Date:  2022-08-12

6.  Rapid detection of the aspergillosis biomarker triacetylfusarinine C using interference-enhanced Raman spectroscopy.

Authors:  Susanne Pahlow; Thomas Orasch; Olga Žukovskaja; Thomas Bocklitz; Hubertus Haas; Karina Weber
Journal:  Anal Bioanal Chem       Date:  2020-03-14       Impact factor: 4.478

7.  Biofilms of the non-tuberculous Mycobacterium chelonae form an extracellular matrix and display distinct expression patterns.

Authors:  Perla Vega-Dominguez; Eliza Peterson; Min Pan; Alessandro Di Maio; Saumya Singh; Siva Umapathy; Deepak K Saini; Nitin Baliga; Apoorva Bhatt
Journal:  Cell Surf       Date:  2020-08-05
  7 in total

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