Literature DB >> 27704229

Automatic construction of subject-specific human airway geometry including trifurcations based on a CT-segmented airway skeleton and surface.

Shinjiro Miyawaki1,2, Merryn H Tawhai3, Eric A Hoffman4, Sally E Wenzel5, Ching-Long Lin6.   

Abstract

We propose a method to construct three-dimensional airway geometric models based on airway skeletons, or centerlines (CLs). Given a CT-segmented airway skeleton and surface, the proposed CL-based method automatically constructs subject-specific models that contain anatomical information regarding branches, include bifurcations and trifurcations, and extend from the trachea to terminal bronchioles. The resulting model can be anatomically realistic with the assistance of an image-based surface; alternatively a model with an idealized skeleton and/or branch diameters is also possible. This method systematically identifies and classifies trifurcations to successfully construct the models, which also provides the number and type of trifurcations for the analysis of the airways from an anatomical point of view. We applied this method to 16 normal and 16 severe asthmatic subjects using their computed tomography images. The average distance between the surface of the model and the image-based surface was 11 % of the average voxel size of the image. The four most frequent locations of trifurcations were the left upper division bronchus, left lower lobar bronchus, right upper lobar bronchus, and right intermediate bronchus. The proposed method automatically constructed accurate subject-specific three-dimensional airway geometric models that contain anatomical information regarding branches using airway skeleton, diameters, and image-based surface geometry. The proposed method can construct (i) geometry automatically for population-based studies, (ii) trifurcations to retain the original airway topology, (iii) geometry that can be used for automatic generation of computational fluid dynamics meshes, and (iv) geometry based only on a skeleton and diameters for idealized branches.

Entities:  

Keywords:  Computed tomography; Geometric fitting; Simulation; Visualization

Mesh:

Year:  2016        PMID: 27704229      PMCID: PMC5352464          DOI: 10.1007/s10237-016-0838-6

Source DB:  PubMed          Journal:  Biomech Model Mechanobiol        ISSN: 1617-7940


  21 in total

1.  Anatomically based geometric modelling of the musculo-skeletal system and other organs.

Authors:  J W Fernandez; P Mithraratne; S F Thrupp; M H Tawhai; P J Hunter
Journal:  Biomech Model Mechanobiol       Date:  2003-12-17

2.  Modeling n-furcated liver vessels from a 3-D segmented volume using hole-making and subdivision methods.

Authors:  Feiniu Yuan; Yanling Chi; Su Huang; Jimin Liu
Journal:  IEEE Trans Biomed Eng       Date:  2011-11-18       Impact factor: 4.538

3.  Geometric modeling of the human normal cerebral arterial system.

Authors:  Ihar Volkau; Weili Zheng; Rafail Baimouratov; Aamer Aziz; Wieslaw L Nowinski
Journal:  IEEE Trans Med Imaging       Date:  2005-04       Impact factor: 10.048

4.  Quantitative analysis of pulmonary airway tree structures.

Authors:  Kálmán Palágyi; Juerg Tschirren; Eric A Hoffman; Milan Sonka
Journal:  Comput Biol Med       Date:  2005-08-01       Impact factor: 4.589

5.  Bronchial anatomy of left lung: a study of multi-detector row CT.

Authors:  Xinya Zhao; Yuanrong Ju; Cheng Liu; Jianfeng Li; Min Huang; Jian Sun; Tao Wang
Journal:  Surg Radiol Anat       Date:  2008-08-26       Impact factor: 1.246

6.  Efficient, physiologically realistic lung airflow simulations.

Authors:  D Keith Walters; Greg W Burgreen; David M Lavallee; David S Thompson; Robert L Hester
Journal:  IEEE Trans Biomed Eng       Date:  2011-07-14       Impact factor: 4.538

7.  Effect of carrier gas properties on aerosol distribution in a CT-based human airway numerical model.

Authors:  Shinjiro Miyawaki; Merryn H Tawhai; Eric A Hoffman; Ching-Long Lin
Journal:  Ann Biomed Eng       Date:  2012-01-14       Impact factor: 3.934

8.  Models of the human bronchial tree.

Authors:  K Horsfield; G Dart; D E Olson; G F Filley; G Cumming
Journal:  J Appl Physiol       Date:  1971-08       Impact factor: 3.531

Review 9.  The lung physiome: merging imaging-based measures with predictive computational models.

Authors:  Merryn H Tawhai; Eric A Hoffman; Ching-Long Lin
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

10.  Patient-Specific Vascular NURBS Modeling for Isogeometric Analysis of Blood Flow.

Authors:  Yongjie Zhang; Yuri Bazilevs; Samrat Goswami; Chandrajit L Bajaj; Thomas J R Hughes
Journal:  Comput Methods Appl Mech Eng       Date:  2007-05-15       Impact factor: 6.756

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  11 in total

1.  Numerical simulations of aerosol delivery to the human lung with an idealized laryngeal model, image-based airway model, and automatic meshing algorithm.

Authors:  Shinjiro Miyawaki; Eric A Hoffman; Ching-Long Lin
Journal:  Comput Fluids       Date:  2017-02-10       Impact factor: 3.013

2.  Differences in Particle Deposition Between Members of Imaging-Based Asthma Clusters.

Authors:  Jiwoong Choi; Lawrence J LeBlanc; Sanghun Choi; Babak Haghighi; Eric A Hoffman; Patrick O'Shaughnessy; Sally E Wenzel; Mario Castro; Sean Fain; Nizar Jarjour; Mark L Schiebler; Loren Denlinger; Renishkumar Delvadia; Ross Walenga; Andrew Babiskin; Ching-Long Lin
Journal:  J Aerosol Med Pulm Drug Deliv       Date:  2019-03-19       Impact factor: 2.849

3.  Aerosol deposition predictions in computed tomography-derived skeletons from severe asthmatics: A feasibility study.

Authors:  Shinjiro Miyawaki; Eric A Hoffman; Sally E Wenzel; Ching-Long Lin
Journal:  Clin Biomech (Bristol, Avon)       Date:  2017-11-04       Impact factor: 2.063

4.  A multiscale analytical model of bronchial airway acoustics.

Authors:  Brian Henry; Thomas J Royston
Journal:  J Acoust Soc Am       Date:  2017-10       Impact factor: 1.840

5.  Airway morphology and inspiratory flow features in the early stages of Chronic Obstructive Pulmonary Disease.

Authors:  Tristan Van de Moortele; Ute Goerke; Chris H Wendt; Filippo Coletti
Journal:  Clin Biomech (Bristol, Avon)       Date:  2017-11-16       Impact factor: 2.063

6.  A computed tomography imaging-based subject-specific whole-lung deposition model.

Authors:  Xuan Zhang; Frank Li; Prathish K Rajaraman; Jiwoong Choi; Alejandro P Comellas; Eric A Hoffman; Benjamin M Smith; Ching-Long Lin
Journal:  Eur J Pharm Sci       Date:  2022-07-29       Impact factor: 5.112

7.  Localization of adventitious respiratory sounds.

Authors:  Brian Henry; Thomas J Royston
Journal:  J Acoust Soc Am       Date:  2018-03       Impact factor: 1.840

8.  Transport and deposition of hygroscopic particles in asthmatic subjects with and without airway narrowing.

Authors:  Prathish K Rajaraman; Jiwoong Choi; Eric A Hoffman; Patrick T O'Shaughnessy; Sanghun Choi; Renishkumar Delvadia; Andrew Babiskin; Ross Walenga; Ching-Long Lin
Journal:  J Aerosol Sci       Date:  2020-04-28       Impact factor: 3.433

9.  CT-derived 3D-diaphragm motion in emphysema and IPF compared to normal subjects.

Authors:  Ji Hee Kang; Jiwoong Choi; Kum Ju Chae; Kyung Min Shin; Chang-Hoon Lee; Junfeng Guo; Ching-Long Lin; Eric A Hoffman; Changhyun Lee
Journal:  Sci Rep       Date:  2021-07-21       Impact factor: 4.996

10.  A Feasible Computational Fluid Dynamics Study for Relationships of Structural and Functional Alterations with Particle Depositions in Severe Asthmatic Lungs.

Authors:  Sanghun Choi; Shinjiro Miyawaki; Ching-Long Lin
Journal:  Comput Math Methods Med       Date:  2018-07-22       Impact factor: 2.238

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