Literature DB >> 27699133

Classification of basal cell carcinoma in human skin using machine learning and quantitative features captured by polarization sensitive optical coherence tomography.

Tahereh Marvdashti1, Lian Duan1, Sumaira Z Aasi2, Jean Y Tang2, Audrey K Ellerbee Bowden1.   

Abstract

We report the first fully automated detection of basal cell carcinoma (BCC), the most commonly occurring type of skin cancer, in human skin using polarization-sensitive optical coherence tomography (PS-OCT). Our proposed automated procedure entails building a machine-learning based classifier by extracting image features from the two complementary image contrasts offered by PS-OCT, intensity and phase retardation (PR), and selecting a subset of features that yields a classifier with the highest accuracy. Our classifier achieved 95.4% sensitivity and specificity, validated by leave-one-patient-out cross validation (LOPOCV), in detecting BCC in human skin samples collected from 42 patients. Moreover, we show the superiority of our classifier over the best possible classifier based on features extracted from intensity-only data, which demonstrates the significance of PR data in detecting BCC.

Entities:  

Keywords:  (100.0100) Image processing; (110.4500) Optical coherence tomography; (170.1870) Dermatology; (170.3880) Medical and biological imaging; (230.5440) Polarization-selective devices

Year:  2016        PMID: 27699133      PMCID: PMC5030045          DOI: 10.1364/BOE.7.003721

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  29 in total

1.  In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography.

Authors:  B H Park; C Saxer; S M Srinivas; J S Nelson; J F de Boer
Journal:  J Biomed Opt       Date:  2001-10       Impact factor: 3.170

2.  Computer-aided diagnosis of dysplasia in Barrett's esophagus using endoscopic optical coherence tomography.

Authors:  Xin Qi; Michael V Sivak; Gerard Isenberg; Joseph E Willis; Andrew M Rollins
Journal:  J Biomed Opt       Date:  2006 Jul-Aug       Impact factor: 3.170

3.  Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography.

Authors:  J F de Boer; T E Milner; M J van Gemert; J S Nelson
Journal:  Opt Lett       Date:  1997-06-15       Impact factor: 3.776

4.  Performance of fourier domain vs. time domain optical coherence tomography.

Authors:  R Leitgeb; C Hitzenberger; Adolf Fercher
Journal:  Opt Express       Date:  2003-04-21       Impact factor: 3.894

5.  High-definition optical coherence tomography algorithm for the discrimination of actinic keratosis from normal skin and from squamous cell carcinoma.

Authors:  M A L M Boone; A Marneffe; M Suppa; M Miyamoto; I Alarcon; R Hofmann-Wellenhof; J Malvehy; G Pellacani; V Del Marmol
Journal:  J Eur Acad Dermatol Venereol       Date:  2015-02-05       Impact factor: 6.166

6.  Automated mosaicing of feature-poor optical coherence tomography volumes with an integrated white light imaging system.

Authors:  Kristen L Lurie; Roland Angst; Audrey K Ellerbee
Journal:  IEEE Trans Biomed Eng       Date:  2014-07       Impact factor: 4.538

7.  Comparison of ex vivo optical coherence tomography with conventional frozen-section histology for visualizing basal cell carcinoma during Mohs micrographic surgery.

Authors:  D Cunha; T Richardson; N Sheth; G Orchard; A Coleman; R Mallipeddi
Journal:  Br J Dermatol       Date:  2011-07-28       Impact factor: 9.302

8.  Computer recognition of cancer in the urinary bladder using optical coherence tomography and texture analysis.

Authors:  Colleen A Lingley-Papadopoulos; Murray H Loew; Michael J Manyak; Jason M Zara
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

9.  Machine-learning classification of non-melanoma skin cancers from image features obtained by optical coherence tomography.

Authors:  Thomas Martini Jørgensen; Andreas Tycho; Mette Mogensen; Peter Bjerring; Gregor B E Jemec
Journal:  Skin Res Technol       Date:  2008-08       Impact factor: 2.365

10.  Evaluation of Optical Coherence Tomography as a Means of Identifying Earlier Stage Basal Cell Carcinomas while Reducing the Use of Diagnostic Biopsy.

Authors:  Orit Markowitz; Michelle Schwartz; Eleanor Feldman; Amanda Bienenfeld; Amy K Bieber; Jeffery Ellis; Usha Alapati; Mark Lebwohl; Daniel M Siegel
Journal:  J Clin Aesthet Dermatol       Date:  2015-10
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  14 in total

Review 1.  Enhanced Endoscopy in Bladder Cancer.

Authors:  Shane Pearce; Siamak Daneshmand
Journal:  Curr Urol Rep       Date:  2018-08-17       Impact factor: 3.092

Review 2.  Review of optical coherence tomography in oncology.

Authors:  Jianfeng Wang; Yang Xu; Stephen A Boppart
Journal:  J Biomed Opt       Date:  2017-12       Impact factor: 3.170

3.  Quantitative Analysis on Ex Vivo Nonlinear Microscopy Images of Basal Cell Carcinoma Samples in Comparison to Healthy Skin.

Authors:  Norbert Kiss; Dóra Haluszka; Kende Lőrincz; Nóra Gyöngyösi; Szabolcs Bozsányi; András Bánvölgyi; Róbert Szipőcs; Norbert Wikonkál
Journal:  Pathol Oncol Res       Date:  2018-07-06       Impact factor: 3.201

4.  Histogram analysis of en face scattering coefficient map predicts malignancy in human ovarian tissue.

Authors:  Yifeng Zeng; Sreyankar Nandy; Bin Rao; Shuying Li; Andrea R Hagemann; Lindsay K Kuroki; Carolyn McCourt; David G Mutch; Matthew A Powell; Ian S Hagemann; Quing Zhu
Journal:  J Biophotonics       Date:  2019-08-05       Impact factor: 3.207

5.  Optical coefficients as tools for increasing the optical coherence tomography contrast for normal brain visualization and glioblastoma detection.

Authors:  Elena B Kiseleva; Konstantin S Yashin; Alexander A Moiseev; Lidia B Timofeeva; Vera V Kudelkina; Anna I Alekseeva; Svetlana V Meshkova; Anastasia V Polozova; Grigory V Gelikonov; Elena V Zagaynova; Natalia D Gladkova
Journal:  Neurophotonics       Date:  2019-07-16       Impact factor: 3.593

6.  En-face polarization-sensitive optical coherence tomography to characterize early-stage esophageal cancer and determine tumor margin.

Authors:  Ping-Hsien Chen; Hiu-Ki Lai; Yi-Chen Yeh; Kuo-Wei Chang; Ming-Chih Hou; Wen-Chuan Kuo
Journal:  Biomed Opt Express       Date:  2022-08-15       Impact factor: 3.562

7.  Dimension reduction technique using a multilayered descriptor for high-precision classification of ovarian cancer tissue using optical coherence tomography: a feasibility study.

Authors:  Catherine St-Pierre; Wendy-Julie Madore; Etienne De Montigny; Dominique Trudel; Caroline Boudoux; Nicolas Godbout; Anne-Marie Mes-Masson; Kurosh Rahimi; Frédéric Leblond
Journal:  J Med Imaging (Bellingham)       Date:  2017-10-12

8.  Intelligent optical diagnosis and treatment system for automated image-guided laser ablation of tumors.

Authors:  Yangxi Li; Yingwei Fan; Chengquan Hu; Fan Mao; Xinran Zhang; Hongen Liao
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-08-07       Impact factor: 2.924

Review 9.  Oral Cancer Screening by Artificial Intelligence-Oriented Interpretation of Optical Coherence Tomography Images.

Authors:  Kousar Ramezani; Maryam Tofangchiha
Journal:  Radiol Res Pract       Date:  2022-04-23

10.  Comparison of intensity, phase retardation, and local birefringence images for filtering blebs using polarization-sensitive optical coherence tomography.

Authors:  Shinichi Fukuda; Akari Fujita; Deepa Kasaragod; Simone Beheregaray; Yuta Ueno; Yoshiaki Yasuno; Tetsuro Oshika
Journal:  Sci Rep       Date:  2018-05-14       Impact factor: 4.379

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