| Literature DB >> 27690381 |
Yanzhe Wang1, Xiaoyu Yin1, Lei Li1, Shumin Deng1, Zhiyi He1.
Abstract
The apolipoprotein C3 (APOC3) gene, which is a member of the APOA1/C3/A4/A5 gene cluster, plays a crucial role in lipid metabolism. Dyslipidemia is an important risk factor for ischemic stroke. In the present study, we performed a hospital-based case-control study of 895 ischemic stroke patients and 883 control subjects to examine the effects of four APOC3 single nucleotide polymorphisms (SNPs) (rs2854116, rs2854117, rs4520 and rs5128) on the risk of ischemic stroke in a northern Chinese Han population. The SNaPshot Multiplex sequencing assay was used for SNP genotyping, and the potential association of genotype distributions and allele frequencies with ischemic stroke was analyzed statistically. Compared with the GG genotype, the CC+GC genotype of rs5128 was significantly associated with an increased risk in females (adjusted OR = 3.38, 95% CI = 1.82-6.28, P <0.01) after all of the risk factors were adjusted for with logistic regression analyses. A similar relationship was found between the rs4520 polymorphism and ischemic stroke risk in Han Chinese women. Under a recessive genetic model, the TT+TC genotypes of this variant increased ischemic stroke risk (adjusted OR = 2.05; 95% CI = 1.28-3.29; P <0.01). Haplotype analysis revealed that in males, the T-C-T-C haplotype of rs2854116-rs2854117-rs4520-rs5128 was significantly more frequent in the ischemic stroke group than in the control group (OR = 1.49, 95% CI = 1.18-1.87, P<0.01). The results of our study indicate that the APOC3 polymorphisms contribute to ischemic stroke susceptibility in females in the northern Chinese Han population.Entities:
Year: 2016 PMID: 27690381 PMCID: PMC5045204 DOI: 10.1371/journal.pone.0163910
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics and risk factors for stroke.
| Variable | Cases n (%) | Controls n (%) | P value |
|---|---|---|---|
| Age (years) | 64.48±8.51 | 63.70±6.68 | 0.33 |
| Age (≤60/>60) | 319(35.6)/576(64.4) | 288(32.6)/595(67.4) | 0.18 |
| Gender (male/female) | 499(55.8)/396(44.2) | 457(51.8)/426(48.2) | 0.09 |
| BMI (≤22.9/>22.9) | 454(50.7)/441(49.3) | 274(65.0)/148(35.0) | <0.01 |
| Diabetes mellitus | 234(26.1) | 64(7.2) | <0.01 |
| Hypertension | 552(61.7) | 178(20.2) | <0.01 |
| History of smoking | 310(34.6) | 137(15.5) | <0.01 |
| History of alcohol use | 154(17.2) | 98(11.1) | <0.01 |
| family history of stroke | 63(7.0) | 46(5.2) | 0.11 |
| Hyperlipidemia | 324(36.2) | 177(20.0) | <0.01 |
Allele and genotype frequencies of genetic polymorphisms among cases and controls as well as their main effects on stroke risk in the male population.
| SNP | Cases | Percent | Controls | Percent | OR(95% CI) | P value |
|---|---|---|---|---|---|---|
| rs2854116 | ||||||
| TT (ref) | 175 | 35.10% | 155 | 33.90% | 1.00 (ref) | - |
| TC | 219 | 43.90% | 219 | 47.90% | 1.00(0.61–1.65) | 0.99 |
| CC | 105 | 21.00% | 83 | 18.20% | 1.45(0.67–3.14) | 0.35 |
| Dominant model TC+CC vs TT | 1.08(0.66–1.76) | 0.76 | ||||
| Recessive model TT+TC vs CC | 0.69(0.36–1.33) | 0.27 | ||||
| rs2854117 | ||||||
| CC (ref) | 172 | 34.50% | 174 | 38.10% | 1.00 (ref) | - |
| CT | 220 | 44.10% | 207 | 45.30% | 1.33(0.81–2.20) | 0.26 |
| TT | 107 | 21.40% | 76 | 16.60% | 1.37(0.64–2.90) | 0.42 |
| Dominant model CT+TT vs CC | 1.50(0.94–2.40) | 0.09 | ||||
| Recessive model CC+CT vs TT | 0.98(0.50–1.90) | 0.95 | ||||
| rs4520 | ||||||
| TT (ref) | 182 | 36.50% | 147 | 30.40% | 1.00 (ref) | - |
| TC | 242 | 48.50% | 258 | 58.20% | 0.74(0.53–1.04) | 0.82 |
| CC | 75 | 15.00% | 52 | 11.40% | 1.10(0.64–1.90) | 0.73 |
| Dominant model TC+CC vs TT | 0.80(0.58–1.10) | 0.17 | ||||
| Recessive model TT+TC vs CC | 0.67(0.41–1.12) | 0.13 | ||||
| rs5128 | ||||||
| CC (ref) | 207 | 41.50% | 170 | 37.20% | 1.00 (ref) | - |
| CG | 228 | 45.70% | 228 | 49.20% | 0.76(0.48–1.20) | 0.24 |
| GG | 64 | 12.80% | 62 | 13.60% | 0.64(0.35–1.16) | 0.14 |
| Dominant model CG+GG vs CC | 0.66(0.44–1.00) | 0.05 | ||||
| Recessive model CC+CG vs GG | 1.19 (0.71–2.01) | 0.52 |
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
*ORs and 95% CIs were calculated by logistic regression.
a,b Adjusted OR(95%CI) and P value, adjusted for age, gender, BMI, diabetes mellitus, hypertension, history of smoking, history of alcohol use, family history of stroke and hyperlipidemia.
Allele and genotype frequencies of genetic polymorphisms among cases and controls as well as their main effects on stroke risk in the female population.
| SNP | Cases | Percent | Controls | Percent | OR(95% CI) | P value |
|---|---|---|---|---|---|---|
| rs2854116 | ||||||
| TT (ref) | 131 | 33.1% | 109 | 25.6% | 1.00 (ref) | - |
| TC | 186 | 47.0% | 219 | 51.4% | 1.05(0.53–2.11) | 0.88 |
| CC | 79 | 19.9% | 98 | 23.0% | 1.59(0.50–5.00) | 0.43 |
| Dominant model TC+CC vs TT | 1.11(0.56–2.19) | 0.76 | ||||
| Recessive model TT+TC vs CC | 0.66(0.24–1.81) | 0.42 | ||||
| rs2854117 | ||||||
| CC (ref) | 136 | 34.50% | 111 | 26.10% | 1.00 (ref) | - |
| CT | 188 | 47.50% | 226 | 53.10% | 0.86(0.44–1.69) | 0.66 |
| TT | 72 | 18.20% | 89 | 20.90% | 1.10(0.34–3.53) | 0.88 |
| Dominant model CT+TT vs CC | 0.89(0.46–1.73) | 0.73 | ||||
| Recessive model CC+CT vs TT | 0.78(0.28–2.17) | 0.64 | ||||
| rs4520 | ||||||
| TT (ref) | 140 | 35.40% | 196 | 46.00% | 1.00 (ref) | - |
| TC | 182 | 46.00% | 132 | 31.00% | 1.24(0.79–1.94) | 0.34 |
| CC | 74 | 18.70% | 98 | 23.00% | 0.61(0.36–1.03) | 0.07 |
| Dominant model TC+CC vs TT | 1.32(0.90–1.94) | 0.16 | ||||
| Recessive model TT+TC vs CC | ||||||
| rs5128 | ||||||
| CC (ref) | 177 | 44.70% | 149 | 35.970% | 1.00 (ref) | - |
| CG | 178 | 44.90% | 182 | 42.70% | 0.67(0.44–1.05) | 0.08 |
| GG | 41 | 10.40% | 95 | 22.30% | ||
| Dominant model CG+GG vs CC | 0.71(0.47–1.08) | 0.11 | ||||
| Recessive model CC+CG vs GG |
Abbreviations: SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval.
*ORs and 95% CIs were calculated by logistic regression.
a,b Adjusted OR(95%CI) and P value, adjusted for age, gender, BMI, diabetes mellitus, hypertension, history of smoking, history of alcohol use, family history of stroke and hyperlipidemia.
Plasma lipid levels among different individuals with various rs5128 genotypes and rs4520 genotypes.
| rs5128 | rs4520 | |||||||
|---|---|---|---|---|---|---|---|---|
| CC | CG | GG | P value | TT | TC | CC | P value | |
| TG (mmol/L) | 1.63±0.79 | 1.62±0.85 | 1.60±0.72 | 0.18 | 1.60±0.78 | 1.66±0.87 | 1.57±0.68 | 0.87 |
| TC (mmol/L) | 4.89±1.08 | 4.87±1.03 | 4.80±1.02 | 0.97 | 4.86±1.01 | 4.84±1.06 | 4.87±1.12 | 0.49 |
| HDL (mmol/L) | 1.38±0.36 | 1.36±0.36 | 1.36±0.30 | 0.81 | 1.37±0.33 | 1.36±0.36 | 1.38±0.35 | 0.36 |
| LDL (mmol/L) | 2.80±0.70 | 2.76±0.89 | 2.90±0.94 | 0.15 | 2.82±0.90 | 2.81±0.89 | 2.70±0.82 | 0.07 |
Haplotype results for males and females.
| Haplotype | Males | Females | ||||||
|---|---|---|---|---|---|---|---|---|
| Cases (%) | Controls (%) | OR (95% CI) | P value | Cases (%) | Controls (%) | OR (95% CI) | P value | |
| T-C-T-C | 264(26.4) | 212(23.1) | 1.18(0.96–1.46) | 0.12 | 221(27.9) | 177(20.8) | 1.49(1.18–1.87) | <0.01 |
| T-C-T-G | 35(3.5) | 60(6.5) | 0.51(0.33–0.78) | <0.01 | 29(3.6) | 35(4.1) | 0.89(0.54–1.47) | 0.64 |
| T-C-C-C | 230(23.1) | 204(22.3) | 1.03(0.83–1.28) | 0.76 | 172(21.7) | 163(19.2) | 1.18(0.92–1.50) | 0.19 |
| C-T-T-G | 278(27.8) | 224(24.5) | 1.18(0.96–1.45) | 0.12 | 192(24.3) | 273(32.0) | 0.68(0.54–0.84) | <0.01 |
| C-T-C-C | 104(10.5) | 73(8) | 1.33(0.97–1.82) | 0.08 | 112(14.1) | 94(11.1) | 1.33(0.99–1.78) | 0.06 |
Abbreviations: OR, odds ratio; CI, confidence interval.