Literature DB >> 27689915

In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics.

Matthew H Ung1, Frederick S Varn1, Chao Cheng1,2,3.   

Abstract

INTRODUCTION: Leukemia is a collection of highly heterogeneous cancers that arise from neoplastic transformation and clonal expansion of immature hematopoietic cells. Post-treatment recurrence is high, especially among elderly patients, thus necessitating more effective treatment modalities. Development of novel anti-leukemic compounds relies heavily on traditional in vitro screens which require extensive resources and time. Therefore, integration of in silico screens prior to experimental validation can improve the efficiency of pre-clinical drug development. Areas covered: This article reviews different methods and frameworks used to computationally screen for anti-leukemic agents. In particular, three approaches are discussed including molecular docking, transcriptomic integration, and network analysis. Expert opinion: Today's data deluge presents novel opportunities to develop computational tools and pipelines to screen for likely therapeutic candidates in the treatment of leukemia. Formal integration of these methodologies can accelerate and improve the efficiency of modern day anti-leukemic drug discovery and ease the economic and healthcare burden associated with it.

Entities:  

Keywords:  Computational drug repositioning; leukemia; molecular docking; network analysis; transcription profiling

Mesh:

Substances:

Year:  2016        PMID: 27689915      PMCID: PMC5180445          DOI: 10.1080/17460441.2016.1243524

Source DB:  PubMed          Journal:  Expert Opin Drug Discov        ISSN: 1746-0441            Impact factor:   6.098


  66 in total

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Review 4.  Chronic lymphocytic leukemia: 2015 Update on diagnosis, risk stratification, and treatment.

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Journal:  Am J Hematol       Date:  2015-05       Impact factor: 10.047

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6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

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7.  Structure-Based Screen Identifies a Potent Small Molecule Inhibitor of Stat5a/b with Therapeutic Potential for Prostate Cancer and Chronic Myeloid Leukemia.

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Journal:  Mol Cancer Ther       Date:  2015-05-29       Impact factor: 6.261

Review 8.  Genome sequencing of lymphoid malignancies.

Authors:  Charles G Mullighan
Journal:  Blood       Date:  2013-09-16       Impact factor: 22.113

9.  Genome-wide association study to identify novel loci associated with therapy-related myeloid leukemia susceptibility.

Authors:  Jeffrey A Knight; Andrew D Skol; Abhijit Shinde; Darcie Hastings; Richard A Walgren; Jin Shao; Thelma R Tennant; Mekhala Banerjee; James M Allan; Michelle M Le Beau; Richard A Larson; Timothy A Graubert; Nancy J Cox; Kenan Onel
Journal:  Blood       Date:  2009-03-18       Impact factor: 22.113

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Authors:  Sonja I Berndt; Christine F Skibola; Vijai Joseph; Nicola J Camp; Alexandra Nieters; Zhaoming Wang; Wendy Cozen; Alain Monnereau; Sophia S Wang; Rachel S Kelly; Qing Lan; Lauren R Teras; Nilanjan Chatterjee; Charles C Chung; Meredith Yeager; Angela R Brooks-Wilson; Patricia Hartge; Mark P Purdue; Brenda M Birmann; Bruce K Armstrong; Pierluigi Cocco; Yawei Zhang; Gianluca Severi; Anne Zeleniuch-Jacquotte; Charles Lawrence; Laurie Burdette; Jeffrey Yuenger; Amy Hutchinson; Kevin B Jacobs; Timothy G Call; Tait D Shanafelt; Anne J Novak; Neil E Kay; Mark Liebow; Alice H Wang; Karin E Smedby; Hans-Olov Adami; Mads Melbye; Bengt Glimelius; Ellen T Chang; Martha Glenn; Karen Curtin; Lisa A Cannon-Albright; Brandt Jones; W Ryan Diver; Brian K Link; George J Weiner; Lucia Conde; Paige M Bracci; Jacques Riby; Elizabeth A Holly; Martyn T Smith; Rebecca D Jackson; Lesley F Tinker; Yolanda Benavente; Nikolaus Becker; Paolo Boffetta; Paul Brennan; Lenka Foretova; Marc Maynadie; James McKay; Anthony Staines; Kari G Rabe; Sara J Achenbach; Celine M Vachon; Lynn R Goldin; Sara S Strom; Mark C Lanasa; Logan G Spector; Jose F Leis; Julie M Cunningham; J Brice Weinberg; Vicki A Morrison; Neil E Caporaso; Aaron D Norman; Martha S Linet; Anneclaire J De Roos; Lindsay M Morton; Richard K Severson; Elio Riboli; Paolo Vineis; Rudolph Kaaks; Dimitrios Trichopoulos; Giovanna Masala; Elisabete Weiderpass; María-Dolores Chirlaque; Roel C H Vermeulen; Ruth C Travis; Graham G Giles; Demetrius Albanes; Jarmo Virtamo; Stephanie Weinstein; Jacqueline Clavel; Tongzhang Zheng; Theodore R Holford; Kenneth Offit; Andrew Zelenetz; Robert J Klein; John J Spinelli; Kimberly A Bertrand; Francine Laden; Edward Giovannucci; Peter Kraft; Anne Kricker; Jenny Turner; Claire M Vajdic; Maria Grazia Ennas; Giovanni M Ferri; Lucia Miligi; Liming Liang; Joshua Sampson; Simon Crouch; Ju-Hyun Park; Kari E North; Angela Cox; John A Snowden; Josh Wright; Angel Carracedo; Carlos Lopez-Otin; Silvia Bea; Itziar Salaverria; David Martin-Garcia; Elias Campo; Joseph F Fraumeni; Silvia de Sanjose; Henrik Hjalgrim; James R Cerhan; Stephen J Chanock; Nathaniel Rothman; Susan L Slager
Journal:  Nat Genet       Date:  2013-06-16       Impact factor: 41.307

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Authors:  Jens T Siveke; Smiths S Lueong; Ben Zhao; Laura Dierichs; Jiang-Ning Gu; Marija Trajkovic-Arsic; Ralf Axel Hilger; Konstantinos Savvatakis; Silvia Vega-Rubin-de-Celis; Sven-Thorsten Liffers; Samuel Peña-Llopis; Diana Behrens; Stephan Hahn
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