Literature DB >> 27671932

SpeedyGenes: Exploiting an Improved Gene Synthesis Method for the Efficient Production of Synthetic Protein Libraries for Directed Evolution.

Andrew Currin1,2,3, Neil Swainston4,5,6, Philip J Day4,5,7, Douglas B Kell4,8,5.   

Abstract

Gene synthesis is a fundamental technology underpinning much research in the life sciences. In particular, synthetic biology and biotechnology utilize gene synthesis to assemble any desired DNA sequence, which can then be incorporated into novel parts and pathways. Here, we describe SpeedyGenes, a gene synthesis method that can assemble DNA sequences with greater fidelity (fewer errors) than existing methods, but that can also be used to encode extensive, statistically designed sequence variation at any position in the sequence to create diverse (but accurate) variant libraries. We summarize the integrated use of GeneGenie to design DNA and oligonucleotide sequences, followed by the procedure for assembling these accurately and efficiently using SpeedyGenes.

Entities:  

Keywords:  Directed evolution; Error correction; Gene synthesis; Protein libraries; Synthetic biology

Mesh:

Substances:

Year:  2017        PMID: 27671932     DOI: 10.1007/978-1-4939-6343-0_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  SpeedyGenesXL: an Automated, High-Throughput Platform for the Preparation of Bespoke Ultralarge Variant Libraries for Directed Evolution.

Authors:  Joanna C Sadler; Neil Swainston; Mark S Dunstan; Andrew Currin; Douglas B Kell
Journal:  Methods Mol Biol       Date:  2022

2.  Ultra-high throughput functional enrichment of large monoamine oxidase (MAO-N) libraries by fluorescence activated cell sorting.

Authors:  Joanna C Sadler; Andrew Currin; Douglas B Kell
Journal:  Analyst       Date:  2018-09-24       Impact factor: 4.616

3.  Novel synthetic nucleotides of notifiable dengue (1-4), Japanese encephalitis, yellow fever and Zika flaviviruses.

Authors:  Gerry Amor Camer; Yuki Oikawa; Hitomi Omaki; Daiji Endoh
Journal:  Future Sci OA       Date:  2018-11-13

4.  GeneORator: An Effective Strategy for Navigating Protein Sequence Space More Efficiently through Boolean OR-Type DNA Libraries.

Authors:  Andrew Currin; Jane Kwok; Joanna C Sadler; Elizabeth L Bell; Neil Swainston; Maria Ababi; Philip Day; Nicholas J Turner; Douglas B Kell
Journal:  ACS Synth Biol       Date:  2019-06-07       Impact factor: 5.110

5.  Engineering the "Missing Link" in Biosynthetic (-)-Menthol Production: Bacterial Isopulegone Isomerase.

Authors:  Andrew Currin; Mark S Dunstan; Linus O Johannissen; Katherine A Hollywood; Maria Vinaixa; Adrian J Jervis; Neil Swainston; Nicholas J W Rattray; John M Gardiner; Douglas B Kell; Eriko Takano; Helen S Toogood; Nigel S Scrutton
Journal:  ACS Catal       Date:  2018-01-24       Impact factor: 13.084

6.  Directed evolution of the PcaV allosteric transcription factor to generate a biosensor for aromatic aldehydes.

Authors:  Leopoldo F M Machado; Andrew Currin; Neil Dixon
Journal:  J Biol Eng       Date:  2019-11-27       Impact factor: 4.355

  6 in total

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