| Literature DB >> 27670767 |
S-W Chang1, C W McDonough1, Y Gong1, T A Johnson2, T Tsunoda2,3, E R Gamazon4, M A Perera5, A Takahashi6, T Tanaka7, M Kubo8, C J Pepine9, J A Johnson1,9, R M Cooper-DeHoff1,9.
Abstract
We conducted a discovery genome-wide association study with expression quantitative trait loci (eQTL) annotation of new-onset diabetes (NOD) among European Americans, who were exposed to a calcium channel blocker-based strategy (CCB strategy) or a β-blocker-based strategy (β-blocker strategy) in the INternational VErapamil SR Trandolapril STudy. Replication of the top signal from the SNP*treatment interaction analysis was attempted in Hispanic and African Americans, and a joint meta-analysis was performed (total 334 NOD cases and 806 matched controls). PLEKHH2 rs11124945 at 2p21 interacted with antihypertensive exposure for NOD (meta-analysis P=5.3 × 10-8). rs11124945 G allele carriers had lower odds for NOD when exposed to the β-blocker strategy compared with the CCB strategy (Odds ratio OR=0.38(0.24-0.60), P=4.0 × 10-5), whereas A/A homozygotes exposed to the β-blocker strategy had increased odds for NOD compared with the CCB strategy (OR=2.02(1.39-2.92), P=2.0 × 10-4). eQTL annotation of the 2p21 locus provides functional support for regulating gene expression.Entities:
Mesh:
Substances:
Year: 2016 PMID: 27670767 PMCID: PMC5368017 DOI: 10.1038/tpj.2016.67
Source DB: PubMed Journal: Pharmacogenomics J ISSN: 1470-269X Impact factor: 3.550
Baseline characteristics of the INVEST-GENES NOD case-control study
| Characteristics | European Americans (n=552, 48%) | Hispanics (n=471, 41%) | African Americans (n=117, 10%) | |||
|---|---|---|---|---|---|---|
| Cases | Controls | Cases | Controls | Cases | Controls | |
| n=138 | n=414 | n=157 | n=314 | n=39 | n=78 | |
| Age, years (mean ± SD) | 65.9±8.7 | 69.1±9.4[ | 64.4±10.2 | 64.1±9.7 | 63.5±10.8 | 64.6±10.3 |
| Gender (male) | 86 (62.3) | 247 (59.7) | 59 (37.6) | 118 (37.6) | 11 (28.2) | 22 (28.2) |
| BMI, Kg/m2 (mean ± SD) | 30.8±5.1 | 28.1±5.2[ | 30.0±4.9 | 28.4±4.7[ | 31.8±5.0 | 31.8±7.2 |
| SBP, mmHg (mean ± SD) | 146.9±17.7 | 149.1±17.5 | 149.5±19.9 | 146.8±18.1 | 152.3±18.6 | 151.0±21.7 |
| DBP, mmHg (mean ± SD) | 84±9.8 | 83.4±10.3 | 89.8±10.0 | 87.6±10.2[ | 89.3±11.4 | 88.7±11.0 |
| History of (%): | ||||||
| Smoking (ever) | 72 (52.2) | 208 (50.2) | 46 (29.3) | 98 (31.2) | 15 (38.5) | 25 (32.1) |
| Left ventricular hypertrophy | 19 (13.8) | 51 (12.3) | 30 (19.1) | 36 (11.5)[ | 6 (15.4) | 15 (19.2) |
| Transient ischemic attack | 14 (10.1) | 44 (10.6) | 8 (5.1) | 8 (2.6) | 5 (12.8) | 4 (5.1) |
| Hypercholesterolemia | 99 (71.7) | 303 (73.2) | 68 (43.3) | 111 (35.4) | 15 (38.5) | 32 (41.0) |
| Revascularization | 73 (52.9) | 200 (48.3) | 6 (3.8) | 14 (4.5) | 7 (18.0) | 9 (11.5) |
| Randomization arm (%): | ||||||
| CCB strategy / | 65 (47.1)/ | 196 (47.3)/ | 73 (46.5)/ | 143 (45.5)/ | 22 (56.4)/ | 41 (52.6)/ |
| β-blocker strategy | 73 (52.9) | 218 (52.7) | 84 (53.5) | 171 (54.5) | 17 (43.6) | 37 (47.4) |
Values are presented as number (percentage) unless otherwise noted.
BMI, body mass index; SBP, systolic blood pressure; DBP diastolic blood pressure; CCB, calcium channel blocker.
p < 0.001 between cases and controls
p < 0.05 between cases and controls
NOD loci from the Genome-wide meta-analysis of all race groups in the INVEST-GENES NOD case-control study
| SNP | Chr | Position | Gene | Effect allele | Non-effect allele | Race | Effect allele frequency |
|
| Meta-analysis |
|---|---|---|---|---|---|---|---|---|---|---|
| rs11124945 | 2 | 43877156 |
| G | A | European American | 0.19 |
| 8.58E-07 | 5.33E-08 |
| Hispanic | 0.22 |
| 1.56E-02[ | |||||||
| African American | 0.30 |
| 2.47E-02[ |
Chr, chromosome
Heterogeneity p-value: 0.21
one-sided p-value
Tissue specific eQTL and gene association for top signals in INVEST European Americans
| Chr | SNP | Tissue | Gene name | |
|---|---|---|---|---|
| 2 | rs6544683 | Subcutaneous adipose | AC016735.2 | 0.019 |
| FTOP1 | 0.049 | |||
| Skeletal muscle | AC010883.5 | 0.0079 | ||
| HAAO | 0.024 | |||
| Whole blood | PLEKHH2 | 0.0095 | ||
| 4 | rs4833103 | Subcutaneous adipose | PGM2 | 0.0013 |
| RP11-539G18.3 | 0.010 | |||
| FAM114A1 | 0.034 | |||
| UBE2K | 0.034 | |||
| Skeletal muscle | RP11-617D20.1 (KLF3 antisense RNA 1) | 0.012 | ||
| Whole blood | KLHL5 | 0.014 | ||