| Literature DB >> 27665939 |
Kung-Hao Liang1,2, Chih-Lang Lin1,3,4, Chao-Wei Hsu1,4, Ming-Wei Lai1,4, Rong-Nan Chien3, Chau-Ting Yeh1,2,4.
Abstract
Seroconversion of hepatitis B virus (HBV) e-antigen (HBeAg) is a critical but often-missed therapeutic goal in standard antiviral treatments. An extreme-phenotype genome-wide association study was performed, comparing untreated spontaneous recoverers (with seroconversion of HBV surface antigen) versus entecavir-treated patients failing to achieve HBeAg seroconversion. A single-nucleotide-polymorphism rs2132039 on the UGT2B28 gene, alongside an adjacent copy number polymorphism (CNP605), manifested the strongest clinical associations (P = 3.4 × 10-8 and 0.001, respectively). Multivariate analysis showed that rs2132039-TT genotypes, but not CNP605 copy numbers, remained associated to spontaneous recoverers (P = 0.009). The clinical association of rs2132039 was validated successfully in an independent cohort (n = 302; P = 0.002). Longitudinal case-only analyses revealed that the rs2132039-TT genotype predicted shorter time-to-HBeAg-seroconversion in all antiviral-treated patients (n = 380, P = 0.012), as well as the peginterferon-treated subgroup (n = 123; P = 0.024, Hazard ratio [HR] = 2.104, Confidence interval [CI] = 1.105-4.007). In the entecavir-treated subgroup, the predictive effect was restricted by pretreatment alanine aminotransferase (ALT) and aspartate aminotransferase (AST) levels, with effective prediction observed in patients with ALT < 200 IU/ml and ALT/AST ratio <2 (n = 132; P = 0.013, HR = 10.538, CI = 1.420-78.196).Entities:
Year: 2016 PMID: 27665939 PMCID: PMC5036189 DOI: 10.1038/srep34088
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Analysis of the exploratory cross-sectional cohort.
| Study Groups | Univariate Analysis | Multivariate Analysis | ||||
|---|---|---|---|---|---|---|
| Spontaneous recoverer | Delayed HBeAg converter | Odds Ratio (95% Confidence Interval) | P | Odds Ratio (95% Confidence Interval) | P | |
| Subject number | 30 | 27 | ||||
| Age (year) | 44.63 ± 5.83 | 45.63 ± 9.72 | 0.984 (0.920–1.052) | 0.630 | ||
| Gender-Male (%) | 20 (66.7%) | 20 (74.07%) | 0.700 (0.222–2.206) | 0.542 | ||
| SNP rs2132039 TT (%)* | 24 (82.76%) | 7 (30.43%) | 11.429 (3.303–39.549) | 6.934 (1.626–29.568) | ||
| non-TT (%) | 5 (17.24%) | 16 (69.57%) | ||||
| CNP605- 2 copies (%)* | 20 (66.67%) | 6 (22.22%) | 7.000 (2.145–22.848) | 2.449 (0.567–10.585) | 0.230 | |
| 1 copy (%) | 10 (33.33%) | 21 (77.78%) | ||||
*Subjects with ambiguous basecalls or CNP calls by the Birdseed v2 and Canary algorithms are not counted
Figure 1The Manhattan plot to illustrate the signal of association across all autosomal chromosomes.
Horizontal axis indicated the chromosomal locations. Vertical axis indicated the P values in the negative base-10 logarithmic scale.
Cross-sectional validation analysis.
| Study Groups | Univariate Analysis | Multivariate Analysis | ||||
|---|---|---|---|---|---|---|
| Spontaneous recoverer | Delayed HBeAg converter | Odds Ratio (95% Confidence Interval) | P | Odds Ratio (95% Confidence Interval) | P | |
| Subject number | 110 | 192 | ||||
| Age (year) | 49.93 ± 14.62 | 43.58 ± 11.61 | 1.038 (1.019–1.058) | 1.036 (1.016–1.056) | ||
| Gender-Male (%) | 63 (57.3%) | 129 (67.19%) | 0.655 (0.404–1.061) | 0.086 | ||
| SNP rs2132039 TT (%) | 92 (83.64%) | 124 (64.58%) | 2.803 (1.561–5.033) | 2.584 (1.424–4.690) | ||
| Subject number | 110 | 326 | ||||
| Age (year) | 49.93 ± 14.62 | 50.92 ± 11.59 | 0.994 (0.976–1.011) | 0.470 | ||
| Gender-Male (%) | 63 (57.3%) | 194 (59.51%) | 0.912 (0.589–1.413) | 0.680 | ||
| SNP rs2132039 TT (%) | 92 (83.64%) | 219 (67.18%) | 2.497 (1.433–4.352) | 2.497 (1.433–4.352) | ||
Cox regression analysis of the time-to-HBeAg seroconversion in patients in the immune-clearance phase.
| Baseline Statistics | Univariate | Multivariate | |||||
|---|---|---|---|---|---|---|---|
| Hazard Ratio | (95% CI) | P | Hazard Ratio | (95% CI) | P | ||
| Subject number | 380 | ||||||
| Gender-Male (%) | 258 (67.89%) | 0.781 | (0.551–1.106) | 0.164 | |||
| Age (year) | 40.27 ± 11.73 | 0.975 | (0.96–0.991) | 0.985 | (0.969–1.001) | 0.064 | |
| HBV DNA (log copies/ml) | 7.98 ± 1.42 | 1.012 | (0.895–1.143) | 0.854 | |||
| Cirrhosis (%) | 66 (17.37%) | 0.409 | (0.226–0.74) | 0.570 | (0.305–1.065) | 0.078 | |
| platelet (1000/uL) | 194.08 ± 76.03 | 1.002 | (1–1.003) | 0.091 | |||
| ALT/AST | 1.65 ± 0.63 | 1.329 | (1.021–1.729) | 1.017 | (0.753–1.374) | 0.912 | |
| ALT (IU/L) | 286.59 ± 410.97 | 1.000 | (1–1.001) | 0.243 | |||
| AST (IU/L) | 179.88 ± 276.57 | 1.000 | (1–1.001) | 0.567 | |||
| SNP rs2132039 TT (%) | 269 (70.79%) | 1.691 | (1.122–2.548) | 1.523 | (1.007–2.302) | ||
| Peginterferon treatment | 123 (32.37%) | 2.563 | (1.82–3.608) | 2.197 | (1.547–3.121) | ||
CI, confidence interval.
Figure 2Cumulative HBeAg seroconversion rates of 380 immune-clearance patients.
(A) patients stratified by the “TT” and “non-TT” genotypes; (B) patients stratified by treatment methods: peginterferon versus entecavir; (C) peginterferon-treated patients stratified by the “TT” and “non-TT” genotypes; (D) entecavir-treated patients with pretreatment ALT < 200, stratified by the “TT” and “non-TT” genotypes; (E) entecavir-treated patients with ALT/AST < 2, stratified by the “TT” and “non-TT” genotypes; (F) entecavir-treated patients with ALT < 200 and ALT/AST < 2, stratified by the “TT” and “non-TT” genotypes. All the P values were derived from log-rank tests.
Cox regression analysis of the peginterferon-treated patient group with respect to the time to HBeAg seroconversion.
| Baseline Statistics | Univariate | Multivariate | |||||
|---|---|---|---|---|---|---|---|
| Hazard Ratio | (95% CI) | P | Hazard Ratio | (95% CI) | P | ||
| Subject number | 123 | ||||||
| Gender-Male (%) | 85 (69.11%) | 0.889 | (0.549–1.438) | 0.631 | |||
| Age (year) | 37.84 ± 11.2 | 0.983 | (0.963–1.003) | 0.094 | |||
| HBV DNA (log copies/ml) | 7.87 ± 1.68 | 0.980 | (0.854–1.124) | 0.774 | |||
| Cirrhosis (%) | 9 (7.32%) | 0.413 | (0.129–1.318) | 0.135 | |||
| platelet (1000/uL) | 201.95 ± 83.64 | 1.001 | (0.999–1.003) | 0.305 | |||
| ALT/AST | 1.8 ± 0.56 | 1.040 | (0.694–1.559) | 0.849 | |||
| ALT (IU/L) | 194.87 ± 169.18 | 1.001 | (1–1.002) | 1.000 | (0.998–1.002) | 0.832 | |
| AST (IU/L) | 122.67 ± 93.04 | 1.003 | (1.001–1.005) | 1.004 | (0.999–1.008) | 0.111 | |
| SNP rs2132039 TT (%) | 97 (78.86%) | 2.007 | (1.057–3.813) | 2.104 | (1.105–4.007) | ||
CI, confidence interval.
Figure 3The forest plot to illustrate hazard ratios and confidence intervals of time-to-HBeAg seroconversion of “TT” versus “Non-TT” patients in various clinical strata.
Significant associations were found in the ALT/AST < 2 and ALT < 200 strata.