Literature DB >> 27660908

The quest for the minimal bacterial genome.

Esteban Martínez-García1, Víctor de Lorenzo2.   

Abstract

The onset of techniques for both editing extant bacterial chromosomes and synthesizing long DNA sequences has enabled addressing the question on the smallest set of genes and biological functions that are required for running an operative cell. But this is not only a fundamental scientific endeavour: simpler genomes could be easier to understand and eventually reprogram for the sake of diverse applications. This has fostered efforts to eliminate apparently useless - if not annoying DNA segments from many biotechnologically relevant strains as well as attempts to (re)write complete genomes á la carte. Yet, the smallest number of genes that enable given functionalities do vary depending on the ultimate agenda, as both natural and engineered small-size genomes afford genetic simplicity by engaging in a suite of complex interactions with the surrounding medium. Copyright Â
© 2016 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2016        PMID: 27660908     DOI: 10.1016/j.copbio.2016.09.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  16 in total

1.  Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss.

Authors:  Xian Zhang; Xueduan Liu; Yili Liang; Xue Guo; Yunhua Xiao; Liyuan Ma; Bo Miao; Hongwei Liu; Deliang Peng; Wenkun Huang; Yuguang Zhang; Huaqun Yin
Journal:  Appl Environ Microbiol       Date:  2017-03-17       Impact factor: 4.792

Review 2.  Artificial cell mimics as simplified models for the study of cell biology.

Authors:  Ali Salehi-Reyhani; Oscar Ces; Yuval Elani
Journal:  Exp Biol Med (Maywood)       Date:  2017-06-04

Review 3.  Extremophilic Microfactories: Applications in Metal and Radionuclide Bioremediation.

Authors:  Catarina R Marques
Journal:  Front Microbiol       Date:  2018-06-01       Impact factor: 5.640

Review 4.  Chasing bacterial chassis for metabolic engineering: a perspective review from classical to non-traditional microorganisms.

Authors:  Patricia Calero; Pablo I Nikel
Journal:  Microb Biotechnol       Date:  2018-06-21       Impact factor: 5.813

Review 5.  Genome-driven cell engineering review: in vivo and in silico metabolic and genome engineering.

Authors:  Sophie Landon; Joshua Rees-Garbutt; Lucia Marucci; Claire Grierson
Journal:  Essays Biochem       Date:  2019-07-03       Impact factor: 8.000

6.  Exploring the fitness benefits of genome reduction in Escherichia coli by a selection-driven approach.

Authors:  Viktor Vernyik; Ildikó Karcagi; Edit Tímár; István Nagy; Ádám Györkei; Balázs Papp; Zsuzsanna Györfy; György Pósfai
Journal:  Sci Rep       Date:  2020-04-30       Impact factor: 4.379

7.  Characterizing a thermostable Cas9 for bacterial genome editing and silencing.

Authors:  Ioannis Mougiakos; Prarthana Mohanraju; Elleke F Bosma; Valentijn Vrouwe; Max Finger Bou; Mihris I S Naduthodi; Alex Gussak; Rudolf B L Brinkman; Richard van Kranenburg; John van der Oost
Journal:  Nat Commun       Date:  2017-11-21       Impact factor: 14.919

8.  Coordinated Changes in Mutation and Growth Rates Induced by Genome Reduction.

Authors:  Issei Nishimura; Masaomi Kurokawa; Liu Liu; Bei-Wen Ying
Journal:  MBio       Date:  2017-07-05       Impact factor: 7.867

9.  Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism.

Authors:  Daniel R Reuß; Josef Altenbuchner; Ulrike Mäder; Hermann Rath; Till Ischebeck; Praveen Kumar Sappa; Andrea Thürmer; Cyprien Guérin; Pierre Nicolas; Leif Steil; Bingyao Zhu; Ivo Feussner; Stefan Klumpp; Rolf Daniel; Fabian M Commichau; Uwe Völker; Jörg Stülke
Journal:  Genome Res       Date:  2016-12-13       Impact factor: 9.043

10.  Rapid and assured genetic engineering methods applied to Acinetobacter baylyi ADP1 genome streamlining.

Authors:  Gabriel A Suárez; Kyle R Dugan; Brian A Renda; Sean P Leonard; Lakshmi Suryateja Gangavarapu; Jeffrey E Barrick
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

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