Literature DB >> 27660882

Anomalous Dynamics of Water Confined in Protein-Protein and Protein-DNA Interfaces.

Song-Ho Chong1, Sihyun Ham1.   

Abstract

Confined water often exhibits anomalous properties not observable in the bulk phase. Although water in hydrophobic confinement has been the focus of intense investigation, the behavior of water confined between hydrophilic surfaces, which are more frequently found in biological systems, has not been fully explored. Here, we investigate using molecular dynamics simulations dynamical properties of the water confined in hydrophilic protein-protein and protein-DNA interfaces. We find that the interfacial water exhibits glassy slow relaxations even at 300 K. In particular, the rotational dynamics show a logarithmic decay that was observed in glass-forming liquids at deeply supercooled states. We argue that such slow water dynamics are indeed induced by the hydrophilic binding surfaces, which is in opposition to the picture that the hydration water slaves protein motions. Our results will significantly impact the view on the role of water in biomolecular interactions.

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Year:  2016        PMID: 27660882     DOI: 10.1021/acs.jpclett.6b01858

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  7 in total

1.  Competition between chiral solvents and chiral monomers in the helical bias of supramolecular polymers.

Authors:  Marcin L Ślęczkowski; Mathijs F J Mabesoone; Piotr Ślęczkowski; Anja R A Palmans; E W Meijer
Journal:  Nat Chem       Date:  2020-11-30       Impact factor: 24.427

2.  Interfacial Water in the SARS Spike Protein: Investigating the Interaction with Human ACE2 Receptor and In Vitro Uptake in A549 Cells.

Authors:  Ajay Vikram Singh; Abhijit Kayal; Ashish Malik; Romi Singh Maharjan; Paul Dietrich; Andreas Thissen; Katherina Siewert; Caterina Curato; Kajal Pande; Dwarakanath Prahlad; Naveen Kulkarni; Peter Laux; Andreas Luch
Journal:  Langmuir       Date:  2022-06-23       Impact factor: 4.331

3.  Surprising Rigidity of Functionally Important Water Molecules Buried in the Lipid Headgroup Region.

Authors:  Rongfu Zhang; Timothy A Cross; Xinhua Peng; Riqiang Fu
Journal:  J Am Chem Soc       Date:  2022-04-19       Impact factor: 16.383

Review 4.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

5.  Ultrafast energy relaxation dynamics of amide I vibrations coupled with protein-bound water molecules.

Authors:  Junjun Tan; Jiahui Zhang; Chuanzhao Li; Yi Luo; Shuji Ye
Journal:  Nat Commun       Date:  2019-03-01       Impact factor: 14.919

6.  Revisiting the Rate-Limiting Step of the ANS-Protein Binding at the Protein Surface and Inside the Hydrophobic Cavity.

Authors:  Chikashi Ota; Shun-Ichi Tanaka; Kazufumi Takano
Journal:  Molecules       Date:  2021-01-14       Impact factor: 4.411

7.  Twist and turn: a revised structural view on the unpaired bubble of class II CPD photolyase in complex with damaged DNA.

Authors:  Manuel Maestre-Reyna; Junpei Yamamoto; Wei-Cheng Huang; Ming-Daw Tsai; Lars-Oliver Essen; Yoshitaka Bessho
Journal:  IUCrJ       Date:  2018-08-08       Impact factor: 4.769

  7 in total

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