Literature DB >> 27660302

Statistical Methods for Cohort Studies of CKD: Prediction Modeling.

Jason Roy1,2, Haochang Shou3,2, Dawei Xie3,2, Jesse Y Hsu3,2, Wei Yang3,2, Amanda H Anderson3,2, J Richard Landis3,2, Christopher Jepson3,2, Jiang He4, Kathleen D Liu5, Chi-Yuan Hsu5,6, Harold I Feldman3,2.   

Abstract

Prediction models are often developed in and applied to CKD populations. These models can be used to inform patients and clinicians about the potential risks of disease development or progression. With increasing availability of large datasets from CKD cohorts, there is opportunity to develop better prediction models that will lead to more informed treatment decisions. It is important that prediction modeling be done using appropriate statistical methods to achieve the highest accuracy, while avoiding overfitting and poor calibration. In this paper, we review prediction modeling methods in general from model building to assessing model performance as well as the application to new patient populations. Throughout, the methods are illustrated using data from the Chronic Renal Insufficiency Cohort Study.
Copyright © 2017 by the American Society of Nephrology.

Entities:  

Keywords:  C-statistic; Calibration; Cohort Studies; Disease Progression; Humans; ROC curve; Renal Insufficiency, Chronic; Risk; Sensitivity; Specificity

Mesh:

Year:  2016        PMID: 27660302      PMCID: PMC5460705          DOI: 10.2215/CJN.06210616

Source DB:  PubMed          Journal:  Clin J Am Soc Nephrol        ISSN: 1555-9041            Impact factor:   10.614


  36 in total

1.  Integrating the predictiveness of a marker with its performance as a classifier.

Authors:  Margaret S Pepe; Ziding Feng; Ying Huang; Gary Longton; Ross Prentice; Ian M Thompson; Yingye Zheng
Journal:  Am J Epidemiol       Date:  2007-11-02       Impact factor: 4.897

Review 2.  Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors.

Authors:  F E Harrell; K L Lee; D B Mark
Journal:  Stat Med       Date:  1996-02-28       Impact factor: 2.373

Review 3.  Developing risk prediction models for kidney injury and assessing incremental value for novel biomarkers.

Authors:  Kathleen F Kerr; Allison Meisner; Heather Thiessen-Philbrook; Steven G Coca; Chirag R Parikh
Journal:  Clin J Am Soc Nephrol       Date:  2014-05-22       Impact factor: 8.237

4.  Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers.

Authors:  Michael J Pencina; Ralph B D'Agostino; Ewout W Steyerberg
Journal:  Stat Med       Date:  2010-11-05       Impact factor: 2.373

5.  Predicting mortality in older adults with kidney disease: a pragmatic prediction model.

Authors:  Jessica W Weiss; Robert W Platt; Micah L Thorp; Xiuhai Yang; David H Smith; Amanda Petrik; Elizabeth Eckstrom; Cynthia Morris; Ann M O'Hare; Eric S Johnson
Journal:  J Am Geriatr Soc       Date:  2015-03-04       Impact factor: 5.562

6.  Development and validation of a model to predict 5-year risk of death without ESRD among older adults with CKD.

Authors:  Nisha Bansal; Ronit Katz; Ian H De Boer; Carmen A Peralta; Linda F Fried; David S Siscovick; Dena E Rifkin; Calvin Hirsch; Steven R Cummings; Tamara B Harris; Stephen B Kritchevsky; Mark J Sarnak; Michael G Shlipak; Joachim H Ix
Journal:  Clin J Am Soc Nephrol       Date:  2015-02-20       Impact factor: 8.237

7.  Decision curve analysis: a novel method for evaluating prediction models.

Authors:  Andrew J Vickers; Elena B Elkin
Journal:  Med Decis Making       Date:  2006 Nov-Dec       Impact factor: 2.583

8.  Chronic Renal Insufficiency Cohort (CRIC) Study: baseline characteristics and associations with kidney function.

Authors:  James P Lash; Alan S Go; Lawrence J Appel; Jiang He; Akinlolu Ojo; Mahboob Rahman; Raymond R Townsend; Dawei Xie; Denise Cifelli; Janet Cohan; Jeffrey C Fink; Michael J Fischer; Crystal Gadegbeku; L Lee Hamm; John W Kusek; J Richard Landis; Andrew Narva; Nancy Robinson; Valerie Teal; Harold I Feldman
Journal:  Clin J Am Soc Nephrol       Date:  2009-06-18       Impact factor: 8.237

9.  One statistical test is sufficient for assessing new predictive markers.

Authors:  Andrew J Vickers; Angel M Cronin; Colin B Begg
Journal:  BMC Med Res Methodol       Date:  2011-01-28       Impact factor: 4.615

10.  Urine neutrophil gelatinase-associated lipocalin levels do not improve risk prediction of progressive chronic kidney disease.

Authors:  Kathleen D Liu; Wei Yang; Amanda H Anderson; Harold I Feldman; Sevag Demirjian; Takayuki Hamano; Jiang He; James Lash; Eva Lustigova; Sylvia E Rosas; Michael S Simonson; Kaixiang Tao; Chi-yuan Hsu
Journal:  Kidney Int       Date:  2013-01-23       Impact factor: 10.612

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  12 in total

1.  Integrated Digital Health System Tools to Support Decision Making and Treatment Preparation in CKD: The PREPARE NOW Study.

Authors:  Jamie A Green; Patti L Ephraim; Felicia Hill-Briggs; Teri Browne; Tara S Strigo; Chelsie L Hauer; Christina Yule; Rebecca A Stametz; Diane Littlewood; Jane F Pendergast; Sarah Peskoe; Jennifer St Clair Russell; Evan Norfolk; Ion D Bucaloiu; Shravan Kethireddy; Daniel Davis; Jeremy dePrisco; Dave Malloy; Sherri Fulmer; Jennifer Martin; Dori Schatell; Navdeep Tangri; Amanda Sees; Cory Siegrist; Jeffrey Breed; Jonathan Billet; Matthew Hackenberg; Nrupen A Bhavsar; L Ebony Boulware
Journal:  Kidney Med       Date:  2021-05-24

2.  Hematuria as a risk factor for progression of chronic kidney disease and death: findings from the Chronic Renal Insufficiency Cohort (CRIC) Study.

Authors:  Paula F Orlandi; Naohiko Fujii; Jason Roy; Hsiang-Yu Chen; L Lee Hamm; James H Sondheimer; Jiang He; Michael J Fischer; Hernan Rincon-Choles; Geetha Krishnan; Raymond Townsend; Tariq Shafi; Chi-Yuan Hsu; John W Kusek; John T Daugirdas; Harold I Feldman
Journal:  BMC Nephrol       Date:  2018-06-26       Impact factor: 2.388

3.  Identification of young adults at risk of an accelerated loss of kidney function in an area affected by Mesoamerican nephropathy.

Authors:  Marvin Gonzalez-Quiroz; Evangelia-Theano Smpokou; Neil Pearce; Ben Caplin; Dorothea Nitsch
Journal:  BMC Nephrol       Date:  2019-01-16       Impact factor: 2.388

4.  Methodological quality of cohort study on rheumatic diseases in China: A systematic review.

Authors:  Huan Zhang; Guoxiang Yi; Mingzhu Dai; Yanping Li; Bin Wu
Journal:  PLoS One       Date:  2020-04-23       Impact factor: 3.240

Review 5.  Contribution of Predictive and Prognostic Biomarkers to Clinical Research on Chronic Kidney Disease.

Authors:  Michele Provenzano; Salvatore Rotundo; Paolo Chiodini; Ida Gagliardi; Ashour Michael; Elvira Angotti; Silvio Borrelli; Raffaele Serra; Daniela Foti; Giovambattista De Sarro; Michele Andreucci
Journal:  Int J Mol Sci       Date:  2020-08-14       Impact factor: 5.923

Review 6.  Risk Factors for CKD Progression: Overview of Findings from the CRIC Study.

Authors:  Mary Hannan; Sajid Ansari; Natalie Meza; Amanda H Anderson; Anand Srivastava; Sushrut Waikar; Jeanne Charleston; Matthew R Weir; Jonathan Taliercio; Edward Horwitz; Milda R Saunders; Katherine Wolfrum; Harold I Feldman; James P Lash; Ana C Ricardo
Journal:  Clin J Am Soc Nephrol       Date:  2020-11-11       Impact factor: 8.237

7.  Predicting mortality in hemodialysis patients using machine learning analysis.

Authors:  Victoria Garcia-Montemayor; Alejandro Martin-Malo; Carlo Barbieri; Francesco Bellocchio; Sagrario Soriano; Victoria Pendon-Ruiz de Mier; Ignacio R Molina; Pedro Aljama; Mariano Rodriguez
Journal:  Clin Kidney J       Date:  2020-08-11

8.  Prediction Model and Risk Stratification Tool for Survival in Patients With CKD.

Authors:  Alexander S Goldfarb-Rumyantzev; Shiva Gautam; Ning Dong; Robert S Brown
Journal:  Kidney Int Rep       Date:  2017-11-28

Review 9.  The Role of Prognostic and Predictive Biomarkers for Assessing Cardiovascular Risk in Chronic Kidney Disease Patients.

Authors:  Michele Provenzano; Michele Andreucci; Luca De Nicola; Carlo Garofalo; Yuri Battaglia; Silvio Borrelli; Ida Gagliardi; Teresa Faga; Ashour Michael; Pasquale Mastroroberto; Giuseppe Filiberto Serraino; Noemi Licastro; Nicola Ielapi; Raffaele Serra
Journal:  Biomed Res Int       Date:  2020-10-08       Impact factor: 3.411

10.  Assessment of androgen receptor, IGF-IR and insulin receptor expression in male patients with severe peripheral artery disease.

Authors:  Michele Andreucci; Damiano Cosimo Rigiracciolo; Umberto Marcello Bracale; Nicola Ielapi; Michele Provenzano; Diletta D'Iuorno; Ashour Michael; Pasquale Mastroroberto; Giuseppe Filiberto Serraino; Marcello Maggiolini; Raffaele Serra
Journal:  Heliyon       Date:  2022-01-12
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