Literature DB >> 27650333

Molecular Diversity of Terpene Synthases in the Liverwort Marchantia polymorpha.

Santosh Kumar1, Chase Kempinski1, Xun Zhuang1, Ayla Norris2, Sibongile Mafu3, Jiachen Zi3, Stephen A Bell1, Stephen Eric Nybo1, Scott E Kinison1, Zuodong Jiang1, Sheba Goklany1, Kristin B Linscott1, Xinlu Chen4, Qidong Jia2, Shoshana D Brown5, John L Bowman6, Patricia C Babbitt5, Reuben J Peters3, Feng Chen2,4, Joe Chappell7.   

Abstract

Marchantia polymorpha is a basal terrestrial land plant, which like most liverworts accumulates structurally diverse terpenes believed to serve in deterring disease and herbivory. Previous studies have suggested that the mevalonate and methylerythritol phosphate pathways, present in evolutionarily diverged plants, are also operative in liverworts. However, the genes and enzymes responsible for the chemical diversity of terpenes have yet to be described. In this study, we resorted to a HMMER search tool to identify 17 putative terpene synthase genes from M. polymorpha transcriptomes. Functional characterization identified four diterpene synthase genes phylogenetically related to those found in diverged plants and nine rather unusual monoterpene and sesquiterpene synthase-like genes. The presence of separate monofunctional diterpene synthases for ent-copalyl diphosphate and ent-kaurene biosynthesis is similar to orthologs found in vascular plants, pushing the date of the underlying gene duplication and neofunctionalization of the ancestral diterpene synthase gene family to >400 million years ago. By contrast, the mono- and sesquiterpene synthases represent a distinct class of enzymes, not related to previously described plant terpene synthases and only distantly so to microbial-type terpene synthases. The absence of a Mg2+ binding, aspartate-rich, DDXXD motif places these enzymes in a noncanonical family of terpene synthases.
© 2016 American Society of Plant Biologists. All rights reserved.

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Year:  2016        PMID: 27650333      PMCID: PMC5134972          DOI: 10.1105/tpc.16.00062

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  73 in total

1.  Genomic organization of plant terpene synthases and molecular evolutionary implications.

Authors:  S C Trapp; R B Croteau
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

2.  Two mRNA species encoding calcium-dependent protein kinases are differentially expressed in sexual organs of Marchantia polymorpha through alternative splicing.

Authors:  R Nishiyama; H Mizuno; S Okada; T Yamaguchi; M Takenaka; H Fukuzawa; K Ohyama
Journal:  Plant Cell Physiol       Date:  1999-02       Impact factor: 4.927

3.  Bifunctional abietadiene synthase: free diffusive transfer of the (+)-copalyl diphosphate intermediate between two distinct active sites.

Authors:  R J Peters; M M Ravn; R M Coates; R B Croteau
Journal:  J Am Chem Soc       Date:  2001-09-19       Impact factor: 15.419

4.  Isolation, characterization, and mechanistic studies of (-)-alpha-gurjunene synthase from Solidago canadensis.

Authors:  C O Schmidt; H J Bouwmeester; N Bülow; W A König
Journal:  Arch Biochem Biophys       Date:  1999-04-15       Impact factor: 4.013

5.  The Y chromosome in the liverwort Marchantia polymorpha has accumulated unique repeat sequences harboring a male-specific gene.

Authors:  S Okada; T Sone; M Fujisawa; S Nakayama; M Takenaka; K Ishizaki; K Kono; Y Shimizu-Ueda; T Hanajiri; K T Yamato; H Fukuzawa; A Brennicke; K Ohyama
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

6.  Abietadiene synthase from grand fir (Abies grandis): characterization and mechanism of action of the "pseudomature" recombinant enzyme.

Authors:  R J Peters; J E Flory; R Jetter; M M Ravn; H J Lee; R M Coates; R B Croteau
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

7.  Pacifigorgianes and tamariscene as constituents of Frullania tamarisci and Valeriana officinalis.

Authors:  C Paul; W A König; H Muhle
Journal:  Phytochemistry       Date:  2001-05       Impact factor: 4.072

8.  Cellular localization of isoprenoid biosynthetic enzymes in Marchantia polymorpha. Uncovering a new role of oil bodies.

Authors:  C Suire; F Bouvier; R A Backhaus; D Bégu; M Bonneu; B Camara
Journal:  Plant Physiol       Date:  2000-11       Impact factor: 8.340

9.  Terpenoid metabolism in wild-type and transgenic Arabidopsis plants.

Authors:  Asaph Aharoni; Ashok P Giri; Stephan Deuerlein; Frans Griepink; Willem-Jan de Kogel; Francel W A Verstappen; Harrie A Verhoeven; Maarten A Jongsma; Wilfried Schwab; Harro J Bouwmeester
Journal:  Plant Cell       Date:  2003-11-20       Impact factor: 11.277

10.  The Jalview Java alignment editor.

Authors:  Michele Clamp; James Cuff; Stephen M Searle; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2004-01-22       Impact factor: 6.937

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  15 in total

1.  Combinatorial biosynthesis and the basis for substrate promiscuity in class I diterpene synthases.

Authors:  Meirong Jia; Sambit K Mishra; Samuel Tufts; Robert L Jernigan; Reuben J Peters
Journal:  Metab Eng       Date:  2019-06-17       Impact factor: 9.783

2.  Conserved bases for the initial cyclase in gibberellin biosynthesis: from bacteria to plants.

Authors:  Cody Lemke; Kevin C Potter; Samuel Schulte; Reuben J Peters
Journal:  Biochem J       Date:  2019-09-24       Impact factor: 3.857

3.  Jasmonate-Related MYC Transcription Factors Are Functionally Conserved in Marchantia polymorpha.

Authors:  María Peñuelas; Isabel Monte; Fabian Schweizer; Armelle Vallat; Philippe Reymond; Gloria García-Casado; Jose M Franco-Zorrilla; Roberto Solano
Journal:  Plant Cell       Date:  2019-08-07       Impact factor: 11.277

4.  Genome-wide detection and classification of terpene synthase genes in Aquilaria agallochum.

Authors:  Ankur Das; Khaleda Begum; Suraiya Akhtar; Raja Ahmed; Ram Kulkarni; Sofia Banu
Journal:  Physiol Mol Biol Plants       Date:  2021-08-05

5.  Extending a Single Residue Switch for Abbreviating Catalysis in Plant ent-Kaurene Synthases.

Authors:  Meirong Jia; Reuben J Peters
Journal:  Front Plant Sci       Date:  2016-11-22       Impact factor: 5.753

6.  Molecular Diversity of Alkenal Double Bond Reductases in the Liverwort Marchantia paleacea.

Authors:  Yi-Feng Wu; Hong-Bo Zheng; Xin-Yan Liu; Ai-Xia Cheng; Hong-Xiang Lou
Journal:  Molecules       Date:  2018-07-04       Impact factor: 4.411

7.  De novo formation of an aggregation pheromone precursor by an isoprenyl diphosphate synthase-related terpene synthase in the harlequin bug.

Authors:  Jason Lancaster; Ashot Khrimian; Sharon Young; Bryan Lehner; Katrin Luck; Anna Wallingford; Saikat Kumar B Ghosh; Philipp Zerbe; Andrew Muchlinski; Paul E Marek; Michael E Sparks; James G Tokuhisa; Claus Tittiger; Tobias G Köllner; Donald C Weber; Dawn E Gundersen-Rindal; Thomas P Kuhar; Dorothea Tholl
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-23       Impact factor: 11.205

Review 8.  Dynamic metabolic solutions to the sessile life style of plants.

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Review 9.  Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts.

Authors:  Tiina A Salminen; D Magnus Eklund; Valentin Joly; Kristina Blomqvist; Daniel P Matton; Johan Edqvist
Journal:  Plants (Basel)       Date:  2018-01-15

10.  Identification and characterization of terpene synthase genes accounting for volatile terpene emissions in flowers of Freesia x hybrida.

Authors:  Fengzhan Gao; Baofeng Liu; Min Li; Xiaoyan Gao; Qiang Fang; Chang Liu; Hui Ding; Li Wang; Xiang Gao
Journal:  J Exp Bot       Date:  2018-08-14       Impact factor: 6.992

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