| Literature DB >> 27649075 |
Giuseppe Reimondo1, Iacopo Chiodini2, Soraya Puglisi3, Anna Pia1, Valentina Morelli2, Darko Kastelan4, Salvatore Cannavo3, Paola Berchialla5, Daniela Giachino6, Paola Perotti1, Alessandra Cuccurullo6, Piero Paccotti1, Paolo Beck-Peccoz2, Mario De Marchi6, Massimo Terzolo1.
Abstract
CONTEXT: Patients with adrenal incidentalomas (AI) may experience detrimental consequences due to a minimal cortisol excess sustained by adrenal adenoma. SNPs of the glucocorticoid receptor gene (NR3C1) modulate individual sensitivity to glucocorticoids and may interfere with the clinical presentation.Entities:
Mesh:
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Year: 2016 PMID: 27649075 PMCID: PMC5029814 DOI: 10.1371/journal.pone.0162437
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
PCR and pyrosecquencing primer.
| NR3C1 SNPs | Forward Primer | Reverse Primer | Pyrosequencing Primer | TA PCR | Amplicon lenght |
|---|---|---|---|---|---|
| ER23/23EK | Bio | 61°C | 98bp | ||
| N363S | Bio | 57°C | 119bp | ||
| BclI | Bio | 58°C | 128bp |
Bio: the 5’ biotin modification of the PCR primer is required for the DNA single strand DNA capture in the Pyrosequencing assay protocol.
TA: annealing temperature for Polimerase Chain Reaction
Clinical and biochemical characteristics and allelic frequency of the patients with adrenal incidentalomas categorized for cortisol secretion after the 1 mg DST.
| Group 1 | Group 2 | Group 3 | ||
|---|---|---|---|---|
| N = 229 | N = 92 | N = 90 | ||
| 59.7 ± 10.1 | 65.1 ± 8.6 | 63.2 ± 9.5 | 1 vs 2, p<0.001; 1 vs 3, p = 0.005; 2 vs 3, p = 0.15 | |
| 64.9 | 60.3 | 66.7 | 1 vs 2, p = 0.4; 1 vs 3, p = 0.7; 2 vs 3, p = 0.4 | |
| 79.1 | 73.2 | 72.7 | 1 vs 2, p = 0.2; 1 vs 3, p = 0.2; 2 vs 3, p = 0.9 | |
| 55.5 | 50.0 | 51.3 | 1 vs 2, p = 0.4; 1 vs 3, p = 0.5; 2 vs 3, p = 0.9 | |
| 59.7 | 69.0 | 72.8 | 1 vs 2, p = 0.1; 1 vs 3, p = 0.03; 2 vs 3, p = 0.6 | |
| 24.0 | 28.4 | 36.6 | 1 vs 2, p = 0.4; 1 vs 3, p = 0.02; 2 vs 3, p = 0.2 | |
| 41.6 | 48.8 | 46.8 | 1 vs 2, p = 0.2; 1 vs 3, p = 0.8; 2 vs 3, p = 0.4 | |
| 8.7 | 16.5 | 15.3 | 1 vs 2, p = 0.04; 1 vs 3, p = 0.08; 2 vs 3, p = 0.8 | |
| 17.9 ± 16.4 | 12.9 ± 8.8 | 9.2 ± 6.8 | 1 vs 2, p = 0.006; 1 vs 3, p<0.001; 2 vs 3, p = 0.001 | |
| 4.8% (11) 0.023 | 5.4%(5) 0.034 | 6.6% (6) 0.028 | 1 vs 2 p = 0.6, 1 vs 3 p = 0.8, 2 vs 3 p = 0.8 | |
| 53.2% (122) 0.321 | 56.5% (52) 0.346 | 53.3% (48) 0.322 | 1 vs 2 p = 0.5, 1 vs 3 p = 0.9, 2 vs 3 p = 0.7 | |
| 5.2% (12) 0.026 | 3.2% (3) 0.021 | 3.3% (3) 0.017 | 1 vs 2 p = 0.8, 1 vs 3 p = 0.6, 2 vs 3 p = 0.8 |
GROUP 1 = Cortisol ≤ 1.8 mcg/dL
GROUP 2 = Cortisol >1.9 mcg/dL and ≤3 mcg/dL
GROUP 3 = Cortisol >3 mcg/dL
ULN = Upper limit of normality
Continuous variable are expressed as mean ± SD
To convert conventional units to SI units: for cortisol, multiply by 27.59 to obtain nanomoles per liter; for ACTH, multiply by 0.22 to obtain picomoles per liter.
Tabular overview of all NR34C1 variants reported in this paper.
| This study | MAF in control population | |||||
|---|---|---|---|---|---|---|
| Current name | Change at DNA and protein level | refSNP | MAF (411 patients) | 1000 Genomes EUR (NCBI Assay ID) | ESP EA | ExACNFE |
| ER23/23EK | c.66G>A (p.Glu22Glu) | rs6189 | 2.19% | 2.98% (ss1317539291) | 2.93% | 2.44% |
| c.68G>A (p.Arg23Lys) | rs6190 | 2.98% (ss1317539290) | 2.85% | 2.44% | ||
| N363S | c.1088A>G (p.Asn363Ser) | rs56149945 (former rs6195 or rs356601909) | 2.67% | 1.79% (ss1317539264) | 3.06% | 3.19% |
| BclI | c.1184+646C>G (p.?) | rs41423247 | 32.8% | 37.97% (ss1317539254) | N/A | N/A |
MAF: Minor Allelic Frequency
1000 Genomes: 1000 genome project Phase3_V1 A global reference for human genetic variation, The 1000 Genomes Project Consortium, Nature 526, 68–74 (01 October 2015) doi:10.1038/nature15393. (URL: http://www.1000genomes.org/) [07,2016 accessed].
EUR: 1,006 samples of European ancestry
ESP: Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP), Seattle, WA (URL: http://evs.gs.washington.edu/EVS/) [07,2016 accessed]
EA: 4,300 European American individuals
ExAC: Exome Aggregation Consortium (ExAC), Cambridge, MA (URL: http://exac.broadinstitute.org) [07,2016 accessed]
NFE: al least 33,329 European (Non Finnish) subjects
N/A: not available, deep intronic position
Correlation between clinical variables and the N363S, Bcl1, ER22/23EK haplotypes, in patients with adrenal incidentalomas.
| N363S | Bcl1 | ER22/23EK | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Wild type | Hetero-homozygote | p value | Wild type | Hetero-homozygote | p value | Wild type | Hetero-homozygote | p value | |
| Obesity | 72.5% (282/389) | 81.8% (18/22) | 0.4 | 75.7% (143/189) | 70.7% (157/222) | 0.3 | 73.3% (288/393) | 66.7% (12/18) | 0.7 |
| Hypertension | 63.8% (248/389) | 86.4% (19/22) | 0.03 | 68.3% (129/189) | 62.1% (138/222) | 0.2 | 64.1% (252/393) | 83.3% (15/18) | 0.1 |
| Diabetes | 25.2% (98/389) | 31.8% (7/22) | 0.6 | 23.8% (45/189) | 27.0% (60/222) | 0.5 | 24.9% (98/393) | 38.9% (7/18) | 0.3 |
| Dyslipidaemia | 43.2% (168/389) | 63.6% (14/22) | 0.06 | 45.5% (86/189) | 43,2% (96/222) | 0.9 | 44.0% (173/393) | 50% (9/18) | 0.8 |
Hormonal features in the different GR polymorphic variant.
| N363S | Bcl1 | ER22/23EK | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Wild type (n = 389) | Hetero-homozygote (n = 22) | p value | Wild type (n = 189) | Hetero-homozygote (n = 222) | p value | Wild type (n = 393) | Hetero-homozygote (n = 18) | p value | |
| Cortisol post DST (mcg/dL) | 2.4 ± 2.0 | 2.5 ± 1.7 | 0.8 | 2.5 ± 2.2 | 2.3 ± 1.9 | 0.3 | 2.4 ± 1.9 | 2.7 ± 2.6 | 0.5 |
| ACTH (pg/mL) | 14.5 ± 13.0 | 17.7 ± 12.1 | 0.3 | 16.3 ± 14.3 | 14.4 ± 8.1 | 0.09 | 14.2 ± 12.1 | 17.5 ± 14.7 | 0.3 |
| UFC (% ULN, n.) | 12.8 (50) | 9.0 (2) | 0.7 | 9.5 (18) | 15.3 (34) | 0.1 | 12.2 (48) | 22.2 (4) | 0.3 |
Data are expressed as mean ± SD with the exception of UFC expressed as percentage of patients with levels higher than the upper limit of normality (ULN) for the reference laboratory.
To convert conventional units to SI units: for cortisol, multiply by 27.59 to obtain nanomoles per liter; for ACTH, multiply by 0.22 to obtain picomoles per liter.
Correlation between the dependent variable hypertension with clinical, hormonal data and GR polymorphism in univariate analysis.
| patients without hypertension N = 143 | patients with hypertension N = 268 | p value | |
|---|---|---|---|
| 59% | 65% | 0.3 | |
| 53/60/66 | 57/64/71 | <0.001 | |
| 64% | 81% | <0.001 | |
| 1.1/1.7/2.4 | 1.4/2.0/3.0 | 0.005 | |
| 2% (0.01) | 7% (0.044) | 0.03 | |
| 58% (0.336) | 53% (0.324) | 0.3 | |
| 2% (0.01) | 6% (0.03) | 0.09 |
Continuous variables are reported as I quartile/median/ III quartile
To convert conventional units to SI units: for cortisol, multiply by 27.59 to obtain nanomoles per liter
Multiple regression analysis with Firth correction.
| AGE | SEX | BMI | N363S | |
|---|---|---|---|---|
| p = 0.06 | p = 0.02 | p<0.01 | ||
| p = 0.05 | p = 0.02 | p<0.01 |
R2: 0.06; p< 0.01