Literature DB >> 27645898

The 1001 Arabidopsis DNA Methylomes: An Important Resource for Studying Natural Genetic, Epigenetic, and Phenotypic Variation.

Zhaobo Lang1, Shaojun Xie2, Jian-Kang Zhu3.   

Abstract

Intraspecific phenotypic diversity is controlled by natural genetic and epigenetic variation. Kawakatsu et al. recently sequenced the DNA methylomes of a global collection of over 1000 Arabidopsis accessions, and have thereby provided a comprehensive resource for studying natural genetic and epigenetic variation as well as the association of such variation with phenotypic diversity.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Arabidopsis; methylome; natural variation

Mesh：

Year:  2016        PMID： 27645898      PMCID： PMC5508569          DOI： 10.1016/j.tplants.2016.09.001

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN： 1360-1385            Impact factor:   18.313


  11 in total

Review 1.  Hidden genetic nature of epigenetic natural variation in plants.

Authors:  Ales Pecinka; Ahmed Abdelsamad; Giang T H Vu
Journal:  Trends Plant Sci       Date:  2013-08-14       Impact factor: 18.313

Review 2.  DNA Methylation and Demethylation in Plant Immunity.

Authors:  A Deleris; T Halter; L Navarro
Journal:  Annu Rev Phytopathol       Date:  2016-08-04       Impact factor: 13.078

Review 3.  Regulation and function of DNA methylation in plants and animals.

Authors:  Xin-Jian He; Taiping Chen; Jian-Kang Zhu
Journal:  Cell Res       Date:  2011-02-15       Impact factor: 25.617

4.  Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.

Authors:  Taiji Kawakatsu; Shao-Shan Carol Huang; Florian Jupe; Eriko Sasaki; Robert J Schmitz; Mark A Urich; Rosa Castanon; Joseph R Nery; Cesar Barragan; Yupeng He; Huaming Chen; Manu Dubin; Cheng-Ruei Lee; Congmao Wang; Felix Bemm; Claude Becker; Ryan O'Neil; Ronan C O'Malley; Danjuma X Quarless; Nicholas J Schork; Detlef Weigel; Magnus Nordborg; Joseph R Ecker
Journal:  Cell       Date:  2016-07-14       Impact factor: 66.850

5.  Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Authors:  Matthew W Horton; Angela M Hancock; Yu S Huang; Christopher Toomajian; Susanna Atwell; Adam Auton; N Wayan Muliyati; Alexander Platt; F Gianluca Sperone; Bjarni J Vilhjálmsson; Magnus Nordborg; Justin O Borevitz; Joy Bergelson
Journal:  Nat Genet       Date:  2012-01-08       Impact factor: 38.330

6.  Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden.

Authors:  Quan Long; Fernando A Rabanal; Dazhe Meng; Christian D Huber; Ashley Farlow; Alexander Platzer; Qingrun Zhang; Bjarni J Vilhjálmsson; Arthur Korte; Viktoria Nizhynska; Viktor Voronin; Pamela Korte; Laura Sedman; Terezie Mandáková; Martin A Lysak; Ümit Seren; Ines Hellmann; Magnus Nordborg
Journal:  Nat Genet       Date:  2013-06-23       Impact factor: 41.307

Review 7.  Genetic and epigenetic control of plant heat responses.

Authors:  Junzhong Liu; Lili Feng; Jianming Li; Zuhua He
Journal:  Front Plant Sci       Date:  2015-04-24       Impact factor: 5.753

8.  DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.

Authors:  Manu J Dubin; Pei Zhang; Dazhe Meng; Marie-Stanislas Remigereau; Edward J Osborne; Francesco Paolo Casale; Philipp Drewe; André Kahles; Geraldine Jean; Bjarni Vilhjálmsson; Joanna Jagoda; Selen Irez; Viktor Voronin; Qiang Song; Quan Long; Gunnar Rätsch; Oliver Stegle; Richard M Clark; Magnus Nordborg
Journal:  Elife       Date:  2015-05-05       Impact factor: 8.140

9.  Patterns of population epigenomic diversity.

Authors:  Robert J Schmitz; Matthew D Schultz; Mark A Urich; Joseph R Nery; Mattia Pelizzola; Ondrej Libiger; Andrew Alix; Richard B McCosh; Huaming Chen; Nicholas J Schork; Joseph R Ecker
Journal:  Nature       Date:  2013-03-06       Impact factor: 49.962

10.  1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana.

Authors: 
Journal:  Cell       Date:  2016-06-09       Impact factor: 41.582
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  1 in total

1.  Modulation of miRNA expression in natural populations of A. thaliana along a wide altitudinal gradient of Indian Himalayas.

Authors:  Abhinandan Mani Tripathi; Akanksha Singh; Rajneesh Singh; Ashwani Kumar Verma; Sribash Roy
Journal:  Sci Rep       Date:  2019-01-24       Impact factor: 4.379
  1 in total

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