Literature DB >> 27642110

Human- and computer-accessible 2D correlation data for a more reliable structure determination of organic compounds. Future roles of researchers, software developers, spectrometer managers, journal editors, reviewers, publisher and database managers toward artificial-intelligence analysis of NMR spectra.

Damien Jeannerat1.   

Abstract

The introduction of a universal data format to report the correlation data of 2D NMR spectra such as COSY, HSQC and HMBC spectra will have a large impact on the reliability of structure determination of small organic molecules. These lists of assigned cross peaks will bridge signals found in NMR 1D and 2D spectra and the assigned chemical structure. The record could be very compact, human and computer readable so that it can be included in the supplementary material of publications and easily transferred into databases of scientific literature and chemical compounds. The records will allow authors, reviewers and future users to test the consistency and, in favorable situations, the uniqueness of the assignment of the correlation data to the associated chemical structures. Ideally, the data format of the correlation data should include direct links to the NMR spectra to make it possible to validate their reliability and allow direct comparison of spectra. In order to take the full benefits of their potential, the correlation data and the NMR spectra should therefore follow any manuscript in the review process and be stored in open-access database after publication. Keeping all NMR spectra, correlation data and assigned structures together at all time will allow the future development of validation tools increasing the reliability of past and future NMR data. This will facilitate the development of artificial intelligence analysis of NMR spectra by providing a source of data than can be used efficiently because they have been validated or can be validated by future users.
Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Entities:  

Keywords:  NMR; database; two-dimensional correlation data

Mesh:

Substances:

Year:  2016        PMID: 27642110     DOI: 10.1002/mrc.4527

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  4 in total

1.  NMReDATA, a standard to report the NMR assignment and parameters of organic compounds.

Authors:  Marion Pupier; Jean-Marc Nuzillard; Julien Wist; Nils E Schlörer; Stefan Kuhn; Mate Erdelyi; Christoph Steinbeck; Antony J Williams; Craig Butts; Tim D W Claridge; Bozhana Mikhova; Wolfgang Robien; Hesam Dashti; Hamid R Eghbalnia; Christophe Farès; Christian Adam; Pavel Kessler; Fabrice Moriaud; Mikhail Elyashberg; Dimitris Argyropoulos; Manuel Pérez; Patrick Giraudeau; Roberto R Gil; Paul Trevorrow; Damien Jeannerat
Journal:  Magn Reson Chem       Date:  2018-05-16       Impact factor: 2.447

Review 2.  High Resolution NMR Spectroscopy as a Structural and Analytical Tool for Unsaturated Lipids in Solution.

Authors:  Eleni Alexandri; Raheel Ahmed; Hina Siddiqui; Muhammad I Choudhary; Constantinos G Tsiafoulis; Ioannis P Gerothanassis
Journal:  Molecules       Date:  2017-10-05       Impact factor: 4.411

3.  Exploratory machine-learned theoretical chemical shifts can closely predict metabolic mixture signals.

Authors:  Kengo Ito; Yuka Obuchi; Eisuke Chikayama; Yasuhiro Date; Jun Kikuchi
Journal:  Chem Sci       Date:  2018-09-10       Impact factor: 9.825

Review 4.  The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research.

Authors:  James B McAlpine; Shao-Nong Chen; Andrei Kutateladze; John B MacMillan; Giovanni Appendino; Andersson Barison; Mehdi A Beniddir; Maique W Biavatti; Stefan Bluml; Asmaa Boufridi; Mark S Butler; Robert J Capon; Young H Choi; David Coppage; Phillip Crews; Michael T Crimmins; Marie Csete; Pradeep Dewapriya; Joseph M Egan; Mary J Garson; Grégory Genta-Jouve; William H Gerwick; Harald Gross; Mary Kay Harper; Precilia Hermanto; James M Hook; Luke Hunter; Damien Jeannerat; Nai-Yun Ji; Tyler A Johnson; David G I Kingston; Hiroyuki Koshino; Hsiau-Wei Lee; Guy Lewin; Jie Li; Roger G Linington; Miaomiao Liu; Kerry L McPhail; Tadeusz F Molinski; Bradley S Moore; Joo-Won Nam; Ram P Neupane; Matthias Niemitz; Jean-Marc Nuzillard; Nicholas H Oberlies; Fernanda M M Ocampos; Guohui Pan; Ronald J Quinn; D Sai Reddy; Jean-Hugues Renault; José Rivera-Chávez; Wolfgang Robien; Carla M Saunders; Thomas J Schmidt; Christoph Seger; Ben Shen; Christoph Steinbeck; Hermann Stuppner; Sonja Sturm; Orazio Taglialatela-Scafati; Dean J Tantillo; Robert Verpoorte; Bin-Gui Wang; Craig M Williams; Philip G Williams; Julien Wist; Jian-Min Yue; Chen Zhang; Zhengren Xu; Charlotte Simmler; David C Lankin; Jonathan Bisson; Guido F Pauli
Journal:  Nat Prod Rep       Date:  2018-07-13       Impact factor: 13.423

  4 in total

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