Literature DB >> 27627348

Analytically tractable model for community ecology with many species.

Benjamin Dickens1, Charles K Fisher1, Pankaj Mehta1.   

Abstract

A fundamental problem in community ecology is understanding how ecological processes such as selection, drift, and immigration give rise to observed patterns in species composition and diversity. Here, we analyze a recently introduced, analytically tractable, presence-absence (PA) model for community assembly, and we use it to ask how ecological traits such as the strength of competition, the amount of diversity, and demographic and environmental stochasticity affect species composition in a community. In the PA model, species are treated as stochastic binary variables that can either be present or absent in a community: species can immigrate into the community from a regional species pool and can go extinct due to competition and stochasticity. Building upon previous work, we show that, despite its simplicity, the PA model reproduces the qualitative features of more complicated models of community assembly. In agreement with recent studies of large, competitive Lotka-Volterra systems, the PA model exhibits distinct ecological behaviors organized around a special ("critical") point corresponding to Hubbell's neutral theory of biodiversity. These results suggest that the concepts of ecological "phases" and phase diagrams can provide a powerful framework for thinking about community ecology, and that the PA model captures the essential ecological dynamics of community assembly.

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Year:  2016        PMID: 27627348     DOI: 10.1103/PhysRevE.94.022423

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  5 in total

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Authors:  Brandon H Schlomann
Journal:  J Theor Biol       Date:  2018-06-06       Impact factor: 2.691

2.  Constrained optimization as ecological dynamics with applications to random quadratic programming in high dimensions.

Authors:  Pankaj Mehta; Wenping Cui; Ching-Hao Wang; Robert Marsland
Journal:  Phys Rev E       Date:  2019-05       Impact factor: 2.529

3.  Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities.

Authors:  Robert Marsland; Wenping Cui; Joshua Goldford; Alvaro Sanchez; Kirill Korolev; Pankaj Mehta
Journal:  PLoS Comput Biol       Date:  2019-02-05       Impact factor: 4.475

4.  Structured environments foster competitor coexistence by manipulating interspecies interfaces.

Authors:  Tristan Ursell
Journal:  PLoS Comput Biol       Date:  2021-01-07       Impact factor: 4.475

5.  The Community Simulator: A Python package for microbial ecology.

Authors:  Robert Marsland; Wenping Cui; Joshua Goldford; Pankaj Mehta
Journal:  PLoS One       Date:  2020-03-24       Impact factor: 3.240

  5 in total

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